BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3070.p
         (128 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981944|ref|YP_001354148.1| hypothetical protein mma_2458 [...   142   5e-36

>gi|152981944|ref|YP_001354148.1| hypothetical protein mma_2458
           [Janthinobacterium sp. Marseille]
          Length = 123

 Score =  142 bits (359), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 88/118 (74%)

Query: 7   QSLILFAHGARDPAWAAPFERLRALTQAAMPGASVQLAFLELMQPDLPTVAAQQVAGGSR 66
           ++LILFAHGARDP WA PF+RL+AL +A  P   V+LAFLELM P LP + A+    G  
Sbjct: 4   RALILFAHGARDPRWAEPFQRLQALVKAQSPELVVELAFLELMTPRLPELMAELAQAGVT 63

Query: 67  CITVIPVFLGQGGHVRRDLPELLEQLRQAHPGVEIRTVPAVGEDEAVLQAIAAYCVGT 124
            +TV+PVFLGQGGHVR DLP ++++L+  +P V    V AVGE+E VLQA+A+YC+GT
Sbjct: 64  EVTVVPVFLGQGGHVRADLPSIVDELKLQYPAVSFTIVEAVGENEQVLQAMASYCLGT 121


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 303,598
Number of extensions: 11442
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 55
Effective length of database: 951,140
Effective search space: 52312700
Effective search space used: 52312700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)