BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3068.p (443 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979899|ref|YP_001354146.1| sulfate adenylyltransferase sub... 763 0.0 gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinob... 80 3e-16 gi|152981101|ref|YP_001355103.1| elongation factor Tu [Janthinob... 80 3e-16 >gi|152979899|ref|YP_001354146.1| sulfate adenylyltransferase subunit 1 [Janthinobacterium sp. Marseille] Length = 443 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/443 (81%), Positives = 407/443 (91%) Query: 1 MNAAATQAQLAQASAQSHERGLLRFITAGSVDDGKSTLIGRLLFDSKGIFADQLDAISRA 60 MNA ++A S ERGLLRFITAGSVDDGKSTLIGRLLFDSKGIFADQLDA+SRA Sbjct: 1 MNAVVADQLSSKAGTPSAERGLLRFITAGSVDDGKSTLIGRLLFDSKGIFADQLDAMSRA 60 Query: 61 KHKRTVGDTVDLSLLTDGLEAEREQGITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVT 120 KHKRTVGDT+DLSLLTDGLEAEREQGITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVT Sbjct: 61 KHKRTVGDTIDLSLLTDGLEAEREQGITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVT 120 Query: 121 GASTADAVIILVDVSKVKLGDDGSVELLTQTKRHSTIAHLLQIQHVIVAVNKMDLVDYDQ 180 GASTADAVIIL+DVSKVKLGDDGSVELL QTKRHSTIAHLLQI+HVIVAVNKMDLV+YDQ Sbjct: 121 GASTADAVIILIDVSKVKLGDDGSVELLIQTKRHSTIAHLLQIEHVIVAVNKMDLVNYDQ 180 Query: 181 TVYDRIVGAYQQFAQQLGLQDVHAIPLSALAGDNVVEASARMPWYQGPTLITLLESLSVY 240 TVYDRIV AY +FA+ LGL+D+ IPLSAL GDNVV + MPWYQGPTLI LLESLSVY Sbjct: 181 TVYDRIVAAYAEFAKTLGLKDIRPIPLSALTGDNVVASGGNMPWYQGPTLIELLESLSVY 240 Query: 241 EDAHEEAFRFPVQLVARHNGHEANDFRGYMGRIEAGKVARGDKLVVLPSGQSATVKDIQT 300 +++H+E FRFPVQLVARHNGHEA+DFRGYMGRIEAGKV++GDKLV+ PSGQ+ATVKDIQT Sbjct: 241 DESHDEPFRFPVQLVARHNGHEADDFRGYMGRIEAGKVSKGDKLVIQPSGQTATVKDIQT 300 Query: 301 LDGSLESAAAGQSVTILLDEYLDISRGDLLASAAQPSTILKSVNADVCWLSEEPLDLRRK 360 LDGSLE A GQS+T+LL+EY+DISRGD+L++A +P+ +LK+VNAD+CWLSEEPLD RRK Sbjct: 301 LDGSLEQAVVGQSITLLLEEYVDISRGDMLSAANRPAELLKTVNADLCWLSEEPLDTRRK 360 Query: 361 YWLKHTTKQVAARVAKVDTLLDINTQERRPAETLKLNDIARISVNVQQPIAADAYQDIRA 420 YWLKHTT+QVAARV K+DTLLDINTQE+RPA+ +KLN IAR+++NV QP+AADAY +IR+ Sbjct: 361 YWLKHTTRQVAARVTKIDTLLDINTQEKRPADEVKLNGIARVTLNVAQPLAADAYDEIRS 420 Query: 421 TGAFILIDEVSHQTVAAGMIRID 443 TG+FILIDEV+HQTVAAGMIR+D Sbjct: 421 TGSFILIDEVTHQTVAAGMIRLD 443 >gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinobacterium sp. Marseille] Length = 396 Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 101/407 (24%), Positives = 177/407 (43%), Gaps = 71/407 (17%) Query: 27 TAGSVDDGKSTLIGRLLFDSKGIFADQLDAISRAKHKRTVGDTVDLSLLTDGLEAEREQG 86 T G VD GK+TL AI+ K+ G+ + + E E+ +G Sbjct: 17 TIGHVDHGKTTLTA---------------AIATVLSKKFGGEAKGYDQIDNAPE-EKARG 60 Query: 87 ITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVTGASTADAVIILVDVSKVKLGDDGSVE 146 ITI+ ++ + T R + D PGH Y +NM+TGA+ D I++ + DG Sbjct: 61 ITINTSHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAA------DGP-- 112 Query: 147 LLTQTKRHSTIAHLLQIQHVIVAVNKMDLVDYDQTVYDRIVGAYQQFAQQLGLQDVHAIP 206 + QT+ H ++ + + ++IV +NK D+VD D + + + ++ + Sbjct: 113 -MPQTREHILLSRQVGVPYIIVFLNKADMVD-DAELLELVEMEVRELLSKY--------- 161 Query: 207 LSALAGDN--VVEASARMPWY--QGP----TLITLLESLSVY----EDAHEEAFRFPVQL 254 GD+ +V+ SA++ GP ++ L +L Y E A + AF PV+ Sbjct: 162 --EFPGDDLPIVKGSAKLALEGDTGPLGEQAILALANALDTYIPTPERAVDGAFLLPVED 219 Query: 255 VARHNGHEANDFRGYM--GRIEAGKVARGD--KLVVLPSGQSATVKDIQTLDGSLESAAA 310 V +G RG + GRIE G + G+ ++V + Q T ++ L+ A Sbjct: 220 VFSISG------RGTVVTGRIERGIIKVGEEIEIVGIRDTQKTTCTGVEMFRKLLDQGQA 273 Query: 311 GQSVTILL--DEYLDISRGDLLASAAQPSTIL--KSVNADVCWLSEEPLDLRRKYWLKHT 366 G +V +LL + D+ RG +L A+P +I K ++ LS++ R + + Sbjct: 274 GDNVGVLLRGTKREDVERGQVL---AKPGSIKPHKHFTGEIYVLSKDE-GGRHTPFFNNY 329 Query: 367 TKQVAARVAKVDTLLDINTQERRPAETLKLNDIARISVNVQQPIAAD 413 Q R V +++ + E + D I+V + PIA + Sbjct: 330 RPQFYFRTTDVTGSIELPKDK----EMVMPGDNVSITVMLINPIAME 372 >gi|152981101|ref|YP_001355103.1| elongation factor Tu [Janthinobacterium sp. Marseille] Length = 396 Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 101/407 (24%), Positives = 177/407 (43%), Gaps = 71/407 (17%) Query: 27 TAGSVDDGKSTLIGRLLFDSKGIFADQLDAISRAKHKRTVGDTVDLSLLTDGLEAEREQG 86 T G VD GK+TL AI+ K+ G+ + + E E+ +G Sbjct: 17 TIGHVDHGKTTLTA---------------AIATVLSKKFGGEAKGYDQIDNAPE-EKARG 60 Query: 87 ITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVTGASTADAVIILVDVSKVKLGDDGSVE 146 ITI+ ++ + T R + D PGH Y +NM+TGA+ D I++ + DG Sbjct: 61 ITINTSHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAA------DGP-- 112 Query: 147 LLTQTKRHSTIAHLLQIQHVIVAVNKMDLVDYDQTVYDRIVGAYQQFAQQLGLQDVHAIP 206 + QT+ H ++ + + ++IV +NK D+VD D + + + ++ + Sbjct: 113 -MPQTREHILLSRQVGVPYIIVFLNKADMVD-DAELLELVEMEVRELLSKY--------- 161 Query: 207 LSALAGDN--VVEASARMPWY--QGP----TLITLLESLSVY----EDAHEEAFRFPVQL 254 GD+ +V+ SA++ GP ++ L +L Y E A + AF PV+ Sbjct: 162 --EFPGDDLPIVKGSAKLALEGDTGPLGEQAILALANALDTYIPTPERAVDGAFLLPVED 219 Query: 255 VARHNGHEANDFRGYM--GRIEAGKVARGD--KLVVLPSGQSATVKDIQTLDGSLESAAA 310 V +G RG + GRIE G + G+ ++V + Q T ++ L+ A Sbjct: 220 VFSISG------RGTVVTGRIERGIIKVGEEIEIVGIRDTQKTTCTGVEMFRKLLDQGQA 273 Query: 311 GQSVTILL--DEYLDISRGDLLASAAQPSTIL--KSVNADVCWLSEEPLDLRRKYWLKHT 366 G +V +LL + D+ RG +L A+P +I K ++ LS++ R + + Sbjct: 274 GDNVGVLLRGTKREDVERGQVL---AKPGSIKPHKHFTGEIYVLSKDE-GGRHTPFFNNY 329 Query: 367 TKQVAARVAKVDTLLDINTQERRPAETLKLNDIARISVNVQQPIAAD 413 Q R V +++ + E + D I+V + PIA + Sbjct: 330 RPQFYFRTTDVTGSIELPKDK----EMVMPGDNVSITVMLINPIAME 372 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 948,927 Number of extensions: 38589 Number of successful extensions: 133 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 3 Length of query: 443 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 357 Effective length of database: 903,079 Effective search space: 322399203 Effective search space used: 322399203 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)