BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3065.p
         (175 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981554|ref|YP_001354143.1| hypothetical protein mma_2453 [...   260   3e-71

>gi|152981554|ref|YP_001354143.1| hypothetical protein mma_2453
           [Janthinobacterium sp. Marseille]
          Length = 175

 Score =  260 bits (665), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 123/172 (71%), Positives = 146/172 (84%), Gaps = 1/172 (0%)

Query: 1   MPEIIKNKTVV-SDDWSVLRLAEGETAENVNVPQGRVIVPLKVWQAQGEALKSRAEIGVW 59
           M  IIK+K VV +DDW++LRLAEGETAE V VP G+VIVPL VWQAQ   LK+R+++GVW
Sbjct: 1   MHNIIKDKAVVGTDDWNLLRLAEGETAETVTVPAGQVIVPLTVWQAQAATLKARSDVGVW 60

Query: 60  LASDERPEELKGQLDSFKVIAVDFPKFADGRGYSIAYNLRARLGYTGELRAIGDVLRDQL 119
           LASDERPE LK    + ++IAVDFPKF DGRGYSIAYNLR R  YTGELRA+GDVLRDQL
Sbjct: 61  LASDERPEALKDDTATLQMIAVDFPKFGDGRGYSIAYNLRMRFDYTGELRAVGDVLRDQL 120

Query: 120 FYMQRVGFDAFAVRADKNIHDAVKGLTDFSEKYQTSWDEKNPLFRRVKRETV 171
           FYMQRVGF++FAVRAD++++DA+KGL+DFSE YQ SWD+K PLFRRV R+ V
Sbjct: 121 FYMQRVGFNSFAVRADRDVNDALKGLSDFSESYQQSWDKKTPLFRRVDRQAV 172


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 417,752
Number of extensions: 16687
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 98
Effective length of database: 936,352
Effective search space: 91762496
Effective search space used: 91762496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)