BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3064.p
         (565 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979850|ref|YP_001354142.1| sulfite reductase (NADPH) hemop...  1004   0.0  
gi|152979799|ref|YP_001352173.1| nitrite reductase (NAD(P)H) lar...    67   3e-12

>gi|152979850|ref|YP_001354142.1| sulfite reductase (NADPH)
           hemoprotein beta-component [Janthinobacterium sp.
           Marseille]
          Length = 564

 Score = 1004 bits (2596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/565 (83%), Positives = 526/565 (93%), Gaps = 1/565 (0%)

Query: 1   MYRYDQYDHLIVKERVAQYRDQVRRRLSDELAEDEFRILRLQNGLYLQRHAYMLRIAIPY 60
           MYRYDQYDH IVKER+AQYRDQVRRRLSDELAEDEFRILRLQNGLYLQRHAYMLRIA+PY
Sbjct: 1   MYRYDQYDHQIVKERIAQYRDQVRRRLSDELAEDEFRILRLQNGLYLQRHAYMLRIAVPY 60

Query: 61  GMLASNQLRKFAEIAVKYDRGYGHFTTRQNIQFNWIKLEESPEILEQLASVEMHAIQTSG 120
           G+L+S Q+R F  IA KYDRGYGHFTTRQNIQFNWIKLEE+P+IL +LASVEMHAIQTSG
Sbjct: 61  GLLSSAQMRMFGHIARKYDRGYGHFTTRQNIQFNWIKLEETPDILTELASVEMHAIQTSG 120

Query: 121 NCIRNTTSDELAGVAADEIVDPRPYAELIREWSTFHPEFAYLPRKFKIAISGAAEDRAAT 180
           NCIRNTTSDELAGVAADEIVDPRPYAE+IREWSTFHPEFAYLPRKFKIAI+GA EDRAAT
Sbjct: 121 NCIRNTTSDELAGVAADEIVDPRPYAEIIREWSTFHPEFAYLPRKFKIAINGAVEDRAAT 180

Query: 181 AVHDIGLHVIKNEAGEVGFRVLVGGGMGRTPILGSVIRDFLPWQHAMSYLEAILRVYNQY 240
           AVHDIGLHVIKNE GEVGFRVLVGGGMGRTPILGSVI +FLPW+H M+YLEAILRVYNQY
Sbjct: 181 AVHDIGLHVIKNEEGEVGFRVLVGGGMGRTPILGSVICEFLPWRHVMTYLEAILRVYNQY 240

Query: 241 GRRDNMYKARIKILVKAIGPEEFARQVEAEWADIKDGPSTLTEEELQRVAKFFTDPAYET 300
           GRRDN+YKARIKILVKAIG +E+ RQVEAEW DIKDGP TLTEEELQRVA FFT PAY+T
Sbjct: 241 GRRDNIYKARIKILVKAIGIDEYRRQVEAEWQDIKDGPGTLTEEELQRVAAFFTMPAYDT 300

Query: 301 LPAVDAEYERLKAEDRGFANWIKRNVKAHKKAGYAAVILSLKKPGVPPGDITADQMNFVA 360
           LPA DAE+E+ KAE++ F +W+ RNVK HK +GYAAV+LS+KK GVPPGD TA+Q++F+A
Sbjct: 301 LPASDAEFEKHKAENKAFNSWLTRNVKPHKVSGYAAVVLSMKKTGVPPGDATAEQLDFMA 360

Query: 361 DLADQYSFGELRVTHEQNLVLADVKQSELYALWQAAKSHGLATPNIGLLTDIICCPGGDF 420
           +LAD+YSFGELRVTHEQN+VL+DV+ ++LYA+W+AAKS GLATPNIGLLTDIICCPGGDF
Sbjct: 361 ELADRYSFGELRVTHEQNVVLSDVRIADLYAVWEAAKSQGLATPNIGLLTDIICCPGGDF 420

Query: 421 CSLANAKSIPIAQAIAEKFENIDFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDGS 480
           CSLANAKSIPIA+AIAE+F+N+DFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDG+
Sbjct: 421 CSLANAKSIPIAEAIAERFDNLDFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDGA 480

Query: 481 EWYQVSLGGAQGNESSVGKIIGPSFSATQMPTVIDRLLQVYVKQRTEEERFIDTVRRIGV 540
           EWYQVS+GGAQGN SS+GKIIGPSFSA QMP VI+RLL+VYV+ R E+ERFIDT RRIGV
Sbjct: 481 EWYQVSIGGAQGNTSSIGKIIGPSFSAHQMPIVIERLLEVYVRDRIEDERFIDTTRRIGV 540

Query: 541 TPFKEFVYATPIRSAEYVAGEDANA 565
           TPFK+ VYATPI+ A + AGEDA A
Sbjct: 541 TPFKDHVYATPIKVA-HAAGEDAYA 564


>gi|152979799|ref|YP_001352173.1| nitrite reductase (NAD(P)H) large
           subunit [Janthinobacterium sp. Marseille]
          Length = 812

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 107/227 (47%), Gaps = 18/227 (7%)

Query: 325 NVKAH---KKAGYAAVILSLKKPGVPPGDITADQMNFVADLADQYSFGELRVTHEQNLVL 381
           N +AH   +K G  +VI     P +  G+  + ++  +AD+ D++    ++VT  Q + L
Sbjct: 557 NERAHANIQKDGTFSVI-----PRMWGGETNSSELRRIADVVDKFKIPTVKVTGGQRIDL 611

Query: 382 ADVKQSELYALWQ-AAKSHGLATPNIGLLTDIICCPGGDFCSLANAKSIPIAQAIAEKFE 440
             VK+ +L A+WQ      GL     GL T +  C G ++C      S  + Q +  +  
Sbjct: 612 LGVKKEDLRAVWQDLGMPSGLGYAK-GLRT-VKTCVGSEWCRFGTQDSTKMGQQLEHQLA 669

Query: 441 NIDFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDGSEWYQVSLGGAQGNESSVGKI 500
            +   H    ++L +SGC   C    + ++G++GVD   S W ++ +GG  G ++ V + 
Sbjct: 670 RMYAPH---KVKLAVSGCPRNCAEAGIKDVGVIGVD---SGW-EIYVGGNGGIKTEVAEF 722

Query: 501 IGPSFSATQMPTVIDRLLQVYVKQRTEEERFIDTVRRIGVTPFKEFV 547
                +  ++       LQ+Y ++    ER +  + R+G+   K+ V
Sbjct: 723 FVKLKTHEEVLEYAGAFLQLYREEGWYLERTVHYLARVGLEYAKQKV 769


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,361,618
Number of extensions: 57682
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 2
Length of query: 565
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 477
Effective length of database: 895,685
Effective search space: 427241745
Effective search space used: 427241745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)