BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3062.p (313 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-... 571 e-164 gi|152981632|ref|YP_001352505.1| cys regulon transcriptional act... 331 3e-92 gi|152981629|ref|YP_001351947.1| cys regulon transcriptional act... 298 3e-82 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 87 2e-18 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 86 4e-18 >gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-like protein [Janthinobacterium sp. Marseille] Length = 313 Score = 571 bits (1471), Expect = e-164, Method: Compositional matrix adjust. Identities = 269/313 (85%), Positives = 297/313 (94%) Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60 MNLHQ RFVREAVRQNFNLTEAAKAL+TSQPGVSKAIIELEEELGVDIF+RHGKRIRGLT Sbjct: 1 MNLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLT 60 Query: 61 EPGRAVLRSVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARYALPKVVQAFTQKYP 120 EPGRAVL+SVELIMQE+DGLKRIG EFAAHDSGSFTIATTHTQARY+LPKVVQAFTQK+P Sbjct: 61 EPGRAVLKSVELIMQEIDGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKFP 120 Query: 121 KVHLSLLQGNPRQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHVVVVPPDHPLLQ 180 KV LSLLQGNP+Q+ +MV DQAD+AIATE++AS EGL+SLPCYQWEH VVVP DHPLL+ Sbjct: 121 KVRLSLLQGNPKQVADMVLMDQADLAIATESIASIEGLISLPCYQWEHQVVVPVDHPLLK 180 Query: 181 SKSLTLEEIAANPLITYDSAFSGRSKIDHAFSLRHLKPDVVLEAIDADVIKTYVELGMGV 240 SKS+TLEE+ A PLITYDSAF+GR+KIDHAF+LR+LKPD++LEAIDADVIKTYVELGMG+ Sbjct: 181 SKSITLEELTAYPLITYDSAFAGRNKIDHAFALRNLKPDILLEAIDADVIKTYVELGMGI 240 Query: 241 GIIAGIAFDAERDRGLRAIPAGHLFGTNVSRVALKQGAYLRGYVYTFIELLAPTLNRKLI 300 GIIAG+AFDAERD+ LRAIPAGHLFGTNVSRVALKQGAYLR YV+TFIELL PTLNRKL+ Sbjct: 241 GIIAGMAFDAERDKNLRAIPAGHLFGTNVSRVALKQGAYLRSYVFTFIELLTPTLNRKLV 300 Query: 301 AQVMEGEKDMYEL 313 QV+ GEKDMYEL Sbjct: 301 EQVLNGEKDMYEL 313 >gi|152981632|ref|YP_001352505.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 308 Score = 331 bits (849), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 158/306 (51%), Positives = 209/306 (68%) Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60 MN Q R +RE R +NLTE A L+TSQPGVS+ I ELEEELGVDIF R+GKR+ GLT Sbjct: 1 MNFQQLRSIRETARCGYNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLT 60 Query: 61 EPGRAVLRSVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARYALPKVVQAFTQKYP 120 +PGR +L+ ++ ++ E + L+R +E+A + G+ +ATTHTQARY LPKVVQ F +++P Sbjct: 61 DPGRGILQIIDRLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPKVVQVFRKEFP 120 Query: 121 KVHLSLLQGNPRQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHVVVVPPDHPLLQ 180 KV ++L Q P I E V + +ADI IATE L+ E LVS PCY+W H VVVP HPLL+ Sbjct: 121 KVRIALQQSTPEHIAEWVLSGKADIGIATEGLSQFEDLVSFPCYRWHHSVVVPDGHPLLE 180 Query: 181 SKSLTLEEIAANPLITYDSAFSGRSKIDHAFSLRHLKPDVVLEAIDADVIKTYVELGMGV 240 K +TL ++A LITYD F+GR ID AF + D+VL A+D+DVI+ YV L +GV Sbjct: 181 KKLITLADLAQYSLITYDLGFTGRGHIDEAFKQADITTDIVLTAMDSDVIQQYVLLNLGV 240 Query: 241 GIIAGIAFDAERDRGLRAIPAGHLFGTNVSRVALKQGAYLRGYVYTFIELLAPTLNRKLI 300 GI+A +A GL+ I A HLF NV+R+A+++GAYLR Y Y FI+ AP L R I Sbjct: 241 GIVASMALQQNGSNGLKVIDASHLFAQNVTRLAVRRGAYLRQYTYDFIQQFAPDLTRADI 300 Query: 301 AQVMEG 306 + M+ Sbjct: 301 DEAMKA 306 >gi|152981629|ref|YP_001351947.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 304 Score = 298 bits (763), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 144/296 (48%), Positives = 191/296 (64%), Gaps = 1/296 (0%) Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60 MN Q RFVREA+R N NLTE A LYTSQ GVSK I +LE+ELG+D+F R GKR+ +T Sbjct: 1 MNFQQLRFVREAIRNNLNLTEVAAVLYTSQSGVSKQIKDLEDELGIDLFVRSGKRLTSVT 60 Query: 61 EPGRAVLRSVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARYALPKVVQAFTQKYP 120 G + V+ I+ E + L+R +++ D+G IA THTQARY LP+VV+ F ++P Sbjct: 61 RAGDGAVEIVKRILLETENLRRYASQYSGVDTGQLIIAATHTQARYTLPRVVEQFNNEFP 120 Query: 121 KVHLSLLQGNPRQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHVVVVPPDHPLLQ 180 KV L L QG P Q+ M+ N +ADI IA+E L +++ PC+ W H V+VP HPL + Sbjct: 121 KVKLELHQGTPNQVAAMISNGEADIGIASEVLDQSPDILAYPCFSWNHQVIVPLGHPLTK 180 Query: 181 SKSLTLEEIAANPLITYDSAFSGRSKIDHAFSLRHLKPDVVLEAIDADVIKTYVELGMGV 240 +TLE+IA PLITY+ F+GR +D AFS L PD L A+DADVIKTYVE G+GV Sbjct: 181 KAPVTLEDIAQYPLITYNPQFTGRKCVDAAFSQAGLVPDFRLTAMDADVIKTYVERGLGV 240 Query: 241 GIIAGIAFDAERDRGLRAIPA-GHLFGTNVSRVALKQGAYLRGYVYTFIELLAPTL 295 GI+A +A D GL + G LFG+ + VA++ G +L + Y F+E AP L Sbjct: 241 GIVAEMALDGIEKIGLTVLETEGTLFGSCTTLVAVRNGTFLPSFAYRFLETFAPNL 296 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/268 (25%), Positives = 124/268 (46%), Gaps = 11/268 (4%) Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60 M L + +++ R+ + AA+A + +QP +S AI +LE+ELGV +F R G I +T Sbjct: 17 MTLTELKYIVAVAREK-HFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEI-SMT 74 Query: 61 EPGRAVLRSVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARYALPKVVQAFTQKYP 120 G ++ E ++++ +K I K+ G F + +T A Y LP +V+ ++ P Sbjct: 75 PLGAQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVP 134 Query: 121 KVHLSLLQGNPRQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHVVVVPPDHPLLQ 180 ++ L L + ++ E++R + D AI +GL+ P Y VV VP H Sbjct: 135 QMPLVLQENFTVKLLELLRQGELDAAIVALPFPD-QGLLVQPVYDEPFVVAVPKHHKWAN 193 Query: 181 SKSLTLEEIAANPLITYDSAFSGRSKIDHA------FSLRHLKPDVVLEAIDADVIKTYV 234 S++ +++ + ++ + R ++ FS E + I+ V Sbjct: 194 RDSVSTDDLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMV 253 Query: 235 ELGMGVGII--AGIAFDAERDRGLRAIP 260 G+G+ ++ A I +D LR IP Sbjct: 254 ASGIGITVLPQASIPDMQAKDGMLRYIP 281 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 85.5 bits (210), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 122/246 (49%), Gaps = 27/246 (10%) Query: 13 VRQNFNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLTEPGRAVLRSVEL 72 V + +LT+AA+ + QP +S+ I LE+ELGV +F R + + LTE G+A+L L Sbjct: 15 VAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGME-LTESGQALLIDARL 73 Query: 73 IMQEVD----GLKRIGKEFAAHDSGSFTIATTHTQARYA-LPKVVQAFTQKYPKVHLSLL 127 I+++V+ G++RI + +SG + T + A + +P V++AF QK P V +++ Sbjct: 74 ILEQVNTTIEGVRRI----SLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPGVIMAVE 129 Query: 128 QGNPRQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHVVVVPPDHPLLQ-SKSLTL 186 + N ++ E +R+++ D+A + S GL E +V +P H L Q KSL L Sbjct: 130 ESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLAQRRKSLPL 189 Query: 187 EEIAANPLI---------TYDSAFSGRSKIDHAFSLRHLKPDVVLEAIDADVIKTYVELG 237 +A + I YDS + A P VV EA + V G Sbjct: 190 TALAEDDFILNRRPSGPGLYDSVIA-------ACRAAGFSPRVVQEAKKNLSTLSLVAAG 242 Query: 238 MGVGII 243 +GV I+ Sbjct: 243 LGVSIV 248 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 677,797 Number of extensions: 27209 Number of successful extensions: 161 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 17 Length of query: 313 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 230 Effective length of database: 914,170 Effective search space: 210259100 Effective search space used: 210259100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)