BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3061.p (630 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980198|ref|YP_001352775.1| CheA chemotaxis protein [Janthi... 832 0.0 gi|152980691|ref|YP_001353785.1| CheA chemotaxis protein [Janthi... 209 4e-55 gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthi... 181 1e-46 gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and... 174 2e-44 gi|152981669|ref|YP_001353298.1| chemotaxis related protein [Jan... 82 8e-17 >gi|152980198|ref|YP_001352775.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 615 Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/632 (70%), Positives = 504/632 (79%), Gaps = 25/632 (3%) Query: 3 DEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSA 62 D+MLKDFVVEAL+LATNVEEHLLTLER+P DL LNAVFR+FHTIKGGAGF+NLPAMVSA Sbjct: 2 DDMLKDFVVEALDLATNVEEHLLTLERNPGDLNTLNAVFRSFHTIKGGAGFMNLPAMVSA 61 Query: 63 CHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPAELKDIL 122 CHLTENLFDALRTG+ PVTP+AIEAALQASGFVADQL+EL+NGA P+SL++MP+ L+DIL Sbjct: 62 CHLTENLFDALRTGQVPVTPIAIEAALQASGFVADQLDELANGAQPESLSAMPSSLEDIL 121 Query: 123 TQAIEGKSEAAPAAAAPATAPAAPVAPQVQATSAAPASVDGSASVMKDGELDWPAMYQAL 182 AI G SE + AP V+ +AAP + ++V DG LDW A+Y A+ Sbjct: 122 NSAIAGTSETS--------------APVVETVAAAPTT--AVSTVGADG-LDWNALYLAV 164 Query: 183 VPGAAVAAPAAADSTASAAAATPAPAAAPAAAAEGEPKAAAPVQQ-NRRAT-DSPGGA-- 238 VP + AP A + + A A A A A E A P +RR + D GGA Sbjct: 165 VPNGS--APELAANASGATPAATVTPVAAAPAKAPETGANKPWDGIDRRGSGDKQGGAAL 222 Query: 239 KEESIRIDAVKLDALLEVAGESVQAANQASVLLEKLQQFKFEGTAAALMSTLAETLGRAS 298 KE+SIR+DAVKLD LLEVAGESVQAANQASVLLEKL QF EG AA LM+ LAETL RAS Sbjct: 223 KEDSIRVDAVKLDTLLEVAGESVQAANQASVLLEKLAQFPVEGHAATLMAALAETLNRAS 282 Query: 299 RYSSELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDVDLVITGADTEVDRVVVDSLY 358 RYS+ELQRATL+TRMQPVG+LFQKFPRLVRELAKDLGKDV+L I GA+TEVDRVVVDSLY Sbjct: 283 RYSTELQRATLATRMQPVGKLFQKFPRLVRELAKDLGKDVELQIEGAETEVDRVVVDSLY 342 Query: 359 DPLVHMLRNSLDHGIE--VDRAAAGKPNKATISLNAWQAGSSVMIEVFDDGKGMDPDMLR 416 DPLVHMLRNSLDHGIE RA +GKP K+TI L AWQ SSVMIE+ DDGKGMD LR Sbjct: 343 DPLVHMLRNSLDHGIEEAAVRAKSGKPAKSTILLKAWQEASSVMIELSDDGKGMDGQQLR 402 Query: 417 SKALAKGLINEHQALTADEALQLVFLPGFSTKEVASSVSGRGVGMDVVKTAVEKHRGTIR 476 +KA++KGLI+++ A + +E LQLVFLPGFSTKEVA+SVSGRGVGMDVVKTAVEKHRG I Sbjct: 403 AKAISKGLISDNAAQSQEEMLQLVFLPGFSTKEVANSVSGRGVGMDVVKTAVEKHRGAIT 462 Query: 477 IESTIGKGTKFSIRLPIELSIIPTMLVRCAGAPLALPMAVVERVVELPETFDEVGGAPVL 536 I+S +G GT+FSIRLPIELSI+PTMLVR + A LALPMAVV+RVVELPE F++VGGAPVL Sbjct: 463 IDSVLGAGTRFSIRLPIELSIVPTMLVRSSDAALALPMAVVQRVVELPEEFEQVGGAPVL 522 Query: 537 RDQGRPLPVNSLAGVLGYEPGNERVGIVMAVPHPYILGVESVEGTADLVIKPLTAIHTAG 596 RDQGRPLPV SLAG L YE G E+VGIV+A P PYIL V VEGTADLVIKP+TAI G Sbjct: 523 RDQGRPLPVRSLAGALAYEVGVEKVGIVIAAPQPYILSVGMVEGTADLVIKPMTAITVPG 582 Query: 597 ITGTARSAEGELVLVVGLSFLLDGCRDLERTA 628 I GTARSAEGELVLVVGLSFLL+GCR + A Sbjct: 583 IAGTARSAEGELVLVVGLSFLLEGCRSTPKLA 614 >gi|152980691|ref|YP_001353785.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 712 Score = 209 bits (533), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 147/417 (35%), Positives = 232/417 (55%), Gaps = 29/417 (6%) Query: 229 RRATDSPG-GAKEESIRIDAVKLDALLEVAGESV--QAA-NQASVLLEKLQQFKFEGTAA 284 +R TD A+ SIR+ K+D L+ + GE V QA Q + L+ +Q + Sbjct: 307 KRDTDKMNVSAESSSIRVGIEKVDQLINLVGELVITQAMIEQRTGALDPMQHER------ 360 Query: 285 ALMSTLAETLGRASRYSSELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDVDLVITG 344 L ++ + +R + +LQ A +S RM P+ +F +FPR+VR+LA LGK V+ V G Sbjct: 361 -----LLNSVSQLTRNTRDLQEAVMSIRMMPMDYVFSRFPRMVRDLASKLGKKVEFVTHG 415 Query: 345 ADTEVDRVVVDSLYDPLVHMLRNSLDHGIEV--DRAAAGKPNKATISLNAWQAGSSVMIE 402 A TE+D+ +++ + DPL H++RNS+DHGIE+ R AAGK +SL+A G +++IE Sbjct: 416 AATELDKGLIERIVDPLTHLVRNSIDHGIEMPDTRVAAGKSASGQLSLSAGHQGGNIIIE 475 Query: 403 VFDDGKGMDPDMLRSKALAKGL-INEHQALTADEALQLVFLPGFSTKEVASSVSGRGVGM 461 V DDG G++ + + +KA +GL +++ L +E QL+F PGFST E + VSGRGVGM Sbjct: 476 VSDDGGGLNRERILAKAKQQGLPVSDD--LPDEEVWQLIFAPGFSTAEAVTDVSGRGVGM 533 Query: 462 DVVKTAVEKHRGTIRIESTIGKGTKFSIRLPIELSIIPTMLVRCAGAPLALPMA-VVERV 520 DVVK + G++ I S+ G GT I LP+ L+I+ M ++ LP+ VVE + Sbjct: 534 DVVKRNITAMGGSVDIRSSKGYGTTILISLPLTLAILDGMSIKVGDEIYILPLGYVVESL 593 Query: 521 V-ELPETFDEVGGAPVLRDQGRPLPVNSLAGVLGYEP--GNERVGIVMAV---PHPYILG 574 EL + D G V++ +G LP+ L + EP + GIV+ + L Sbjct: 594 QPELADIKDISGQGQVIKVRGDYLPLIPLYKIFSIEPRFTDPSEGIVVILESESKKAALF 653 Query: 575 VESVEGTADLVIKPLTAIH--TAGITGTARSAEGELVLVVGLSFLLDGCRDLERTAV 629 V+ + G +V+K L + + AGI+G +G + L++ ++ LL R L ++ Sbjct: 654 VDDLVGQQQVVVKNLESNYRKVAGISGATILGDGGVALIIDVAALLRSSRQLNDESI 710 Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 8/148 (5%) Query: 4 EMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSAC 63 + + F E EL +E+ LL ++ D E LNA+FRA H+IKGGA + + Sbjct: 7 QFFQVFFDETEELLAEMEKLLLAVDVSAPDEEDLNAIFRAAHSIKGGAATFGITDLTEVT 66 Query: 64 HLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPAELKDILT 123 H+ E L D +R G+ + ++A L A + QL+ P +L+ + Sbjct: 67 HVLETLLDRIRKGEMALMAEHVDAFLSAKDVLKMQLD--------GHRLHTPVDLEAVAD 118 Query: 124 QAIEGKSEAAPAAAAPATAPAAPVAPQV 151 I +S + AA P +AP A P + Sbjct: 119 VRILLESLSQDDAAPPQSAPVAAAVPGI 146 >gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 756 Score = 181 bits (458), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 148/460 (32%), Positives = 220/460 (47%), Gaps = 73/460 (15%) Query: 187 AVAAPAAADSTASAAAATPAPAAAPAAAAEGEPKAAAPVQQNRRATDSPGGAKEESIRID 246 A+A P DS SA AT A A AE +P + + R ++ S+R++ Sbjct: 133 AMADPDGGDS--SADTATDNAAGNLAVEAESQPISNGAMASEARESNI------RSVRVN 184 Query: 247 AVKLDALLEVAGESV---------------------QAANQASVLLEKLQ-QFKFEGTAA 284 A LD LL ++GES+ +A +L +KL Q E T A Sbjct: 185 AKNLDRLLSLSGESLVESRRLKPFTASILRLKRTQREAGQALDLLHQKLSAQTADEATQA 244 Query: 285 AL----------MSTLAETLG-------RASRYSSELQRATLSTRMQPVGRLFQKFPRLV 327 AL +A+ LG R+ S L L+ RM+P + R+V Sbjct: 245 ALSEVRTLMMQCQHMVADQLGELETFDRRSVNLSQRLYDEALACRMRPFADGTHGYARMV 304 Query: 328 RELAKDLGKDVDLVITGADTEVDRVVVDSLYDPLVHMLRNSLDHGIE--VDRAAAGKPNK 385 R++ LGK V L I G T++DR +++ L P+ H+LRN++DHGIE R AAGKP + Sbjct: 305 RDVGHALGKSVRLEIIGNATQIDRDILEKLEAPIGHLLRNAIDHGIENPQQRKAAGKPEQ 364 Query: 386 ATISLNAWQAGSSVMIEVFDDGKGMDPDMLRSKALAKGLINEHQALTADEALQLVFL--- 442 I+L A + +++ V DDG G+D D LR+ + + L N AD QL Sbjct: 365 GLITLEARHSAGMLLVNVSDDGAGIDLDQLRATIIERKLSN------ADTVAQLSEAELL 418 Query: 443 -----PGFSTKEVASSVSGRGVGMDVVKTAVEKHRGTIRIESTIGKGTKFSIRLPIELSI 497 P FS ++ + +SGRGVG+DVV +++ RGTIRI ST +GT+F ++LP+ LS+ Sbjct: 419 EFLLLPSFSLRDTVTDISGRGVGLDVVSDMLKQVRGTIRISSTPQQGTRFQMQLPLTLSV 478 Query: 498 IPTMLVRCAGAPLALPMAVVERVVEL-PETFDEVGGAPVLRDQGRPLPVNSLAGVLGYEP 556 I ++LV P A P+A V R +EL + + G GR + + S +L + Sbjct: 479 IRSLLVTINEEPYAFPLAYVNRTLELRRDQLAMLEGQQHFTFDGRQIGLVSAHQIL--QK 536 Query: 557 GNER-------VGIVMAVPHPYILGVESVEGTADLVIKPL 589 G R V ++ H Y L V+ G LV++PL Sbjct: 537 GELRAKDDLVSVVVIGDHEHTYGLAVDDFLGERMLVVQPL 576 >gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 1901 Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 113/345 (32%), Positives = 182/345 (52%), Gaps = 39/345 (11%) Query: 294 LGRASRYSSELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDVDLVITGADTEVDRVV 353 L +R + +LQ+ + RM + ++ R+ R+ +K+ K V+L I G+ E+DR V Sbjct: 1396 LTTQARLTRDLQQDLMRVRMVQFASISERLFRVTRQASKETDKRVNLDIRGSAVEIDRGV 1455 Query: 354 VDSLYDPLVHMLRNSLDHGIEV--DRAAAGKPNKATISLNAWQAGSSVMIEVFDDGKGMD 411 ++ + P H+LRN++ HGIE R AAGK + + Q G+ V+I DDG+G++ Sbjct: 1456 LEKMAGPFEHLLRNAIVHGIESREKRQAAGKNETGELRIEIRQEGNEVVIHFSDDGQGLN 1515 Query: 412 PDMLRSKALAKGLINEHQALTADEALQLVFLPGFSTKEVASSVSGRGVGMDVVKTAVEKH 471 D +R+KAL+ GL+ E AL+ E L+F PGFST E + ++GRG+GMDVV++ Sbjct: 1516 LDNIRNKALSSGLLTEDMALSDSETTDLIFHPGFSTAEEITELAGRGIGMDVVRSEAASL 1575 Query: 472 RGTIRIESTIGKGTKFSIRLPIELSIIPTMLVRCAGAPLALPMAVVERVVELPE-----T 526 G + I S GKG F+I LP+ L++ +L+ G A+P +VE+V +L Sbjct: 1576 GGRVAIASEAGKGANFTIHLPLTLAVTQVVLLSTGGKTYAIPSVLVEQVQQLKTGPLAAA 1635 Query: 527 FDEVGGAPVLRDQGRPLPVNSLAGVLG----------YEP------GNERVGIVMAVPHP 570 ++E GA + Q + +P++ L+ +LG Y P GNERV Sbjct: 1636 YNE--GAVMW--QSQRVPMHYLSSLLGDLQVAPVTQQYSPLLILKSGNERVA-------- 1683 Query: 571 YILGVESVEGTADLVIKPL--TAIHTAGITGTARSAEGELVLVVG 613 L V+ + G ++V+K + GI G GE+VL++ Sbjct: 1684 --LHVDEILGNREVVVKNIGPQLSRMIGIAGATVLGSGEIVLILN 1726 >gi|152981669|ref|YP_001353298.1| chemotaxis related protein [Janthinobacterium sp. Marseille] Length = 806 Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/123 (41%), Positives = 67/123 (54%), Gaps = 2/123 (1%) Query: 357 LYDPLVHMLRNSLDHGIEVD--RAAAGKPNKATISLNAWQAGSSVMIEVFDDGKGMDPDM 414 L D +H++RN++DHGIE R A GKP ISL + I + DDG+G+ Sbjct: 624 LKDVFMHLIRNAMDHGIETPEVRVALGKPEAGKISLGMDMDEKMLNITLRDDGRGLALKR 683 Query: 415 LRSKALAKGLINEHQALTADEALQLVFLPGFSTKEVASSVSGRGVGMDVVKTAVEKHRGT 474 +R AL KGL + L A +L+ GFST + S VSGRGVGMD V V + G+ Sbjct: 684 IRQIALDKGLSDAPDQLDDLAAARLILQAGFSTADKVSEVSGRGVGMDAVLAFVSRENGS 743 Query: 475 IRI 477 I I Sbjct: 744 IDI 746 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.130 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,236,223 Number of extensions: 48733 Number of successful extensions: 239 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 227 Number of HSP's successfully gapped: 6 Length of query: 630 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 541 Effective length of database: 891,988 Effective search space: 482565508 Effective search space used: 482565508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)