BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3060.p
         (249 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981520|ref|YP_001352776.1| CheZ chemotaxis protein [Janthi...   304   3e-84
gi|152980356|ref|YP_001353779.1| chemotaxis regulator CheZ [Jant...   131   3e-32

>gi|152981520|ref|YP_001352776.1| CheZ chemotaxis protein
           [Janthinobacterium sp. Marseille]
          Length = 263

 Score =  304 bits (779), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 169/205 (82%)

Query: 45  DAEDQSDKPMYERLGGIVRLLHDSMRELGYDRSLTDVAEQIGDAQSRLEHIATLTEQAAN 104
           + ED  DKPM+ERLGGIVRLLHDS+RELGYDRSL++VA +I DAQ RLE++ATLTEQAAN
Sbjct: 59  NGEDNGDKPMFERLGGIVRLLHDSLRELGYDRSLSNVASEITDAQGRLEYVATLTEQAAN 118

Query: 105 KVLNALDSGMPAQDRLQEQAKDINARWTKLYAGQMSIDEFKALAGDSQKFSSSVMESTEA 164
           KVLNA+D GMP QD L + AKD++ARW +L+ G++S+DEFK LA DS++F+  V E TEA
Sbjct: 119 KVLNAIDVGMPEQDALSKSAKDMDARWAQLFEGKLSVDEFKTLANDSRQFAGKVTEVTEA 178

Query: 165 EKARMLEIMMAQDFQDITGQLIKKIVAITATAERELAQLLRDNAPPEVKAQMDAEKPVSL 224
           EKAR+LEIMMAQDFQDITGQLIKKIVAIT  AE ELAQLLRDNAPPEVKA     KPV L
Sbjct: 179 EKARLLEIMMAQDFQDITGQLIKKIVAITHKAESELAQLLRDNAPPEVKAAHPENKPVEL 238

Query: 225 MNGPSVGGTAMAQDDVDDLLDSLGF 249
           MNGPS    AM QDDVD LL  LGF
Sbjct: 239 MNGPSAPAIAMVQDDVDSLLADLGF 263


>gi|152980356|ref|YP_001353779.1| chemotaxis regulator CheZ
           [Janthinobacterium sp. Marseille]
          Length = 235

 Score =  131 bits (330), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 122/200 (61%), Gaps = 8/200 (4%)

Query: 54  MYERLGGIVRLLHDSMRELGYDRSLTDVAEQIGDAQSRLEHIATLTEQAANKVLNALDSG 113
           M  R+G + R LH+S+R LG+D+ +   +  I DA+ RL+++A +TEQAA +VLNA ++ 
Sbjct: 40  MVSRVGHMTRALHESLRGLGFDQLIERASHDIPDARDRLDYVARMTEQAAQRVLNATEAA 99

Query: 114 MPAQDRLQEQAKDINARWTKLYAGQMSIDEFKALAGDSQKFSSSVMESTEAEKARMLEIM 173
            P Q+++Q  A  +  +W +   G  S  ++KALA  +    ++   +T   +  ++ IM
Sbjct: 100 GPLQEQVQSGAAAMATQWQQALQGGFSEAKYKALAEQTIAHLNATQSATTETRQHLMNIM 159

Query: 174 MAQDFQDITGQLIKKIVAITATAERELAQLLRDNAPPEVKAQMDAEKPVSLMNGPSVGGT 233
           MAQDFQD+TGQ+IKK+  +    E++L QLL D AP E K +++      L+NGP +  T
Sbjct: 160 MAQDFQDLTGQVIKKVTELAHGLEQQLLQLLVDYAPAEKKKEVE----TGLLNGPQINPT 215

Query: 234 A----MAQDDVDDLLDSLGF 249
                  Q+ VDDLL+SLGF
Sbjct: 216 GNDVVAGQEQVDDLLESLGF 235


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.311    0.127    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 495,795
Number of extensions: 17058
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 168
Effective length of database: 921,564
Effective search space: 154822752
Effective search space used: 154822752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 128 (53.9 bits)