BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3059.p (662 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982674|ref|YP_001352781.1| outer membrane hemin/siderophor... 629 0.0 gi|152980274|ref|YP_001355313.1| FecA iron(III) dicitrate transp... 74 2e-14 gi|152981258|ref|YP_001355221.1| outer membrane receptor [Janthi... 73 6e-14 gi|152981186|ref|YP_001352782.1| hypothetical protein mma_1092 [... 71 3e-13 gi|152982643|ref|YP_001351756.1| TonB-dependent receptor [Janthi... 66 8e-12 >gi|152982674|ref|YP_001352781.1| outer membrane hemin/siderophore receptor protein [Janthinobacterium sp. Marseille] Length = 666 Score = 629 bits (1623), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/655 (50%), Positives = 446/655 (68%), Gaps = 24/655 (3%) Query: 26 ILSTLIPACWAGAATADLAQPLSAVVVSASRFPNDPAFAPVAATVITAEQIREAGIDNAN 85 ++S L + A + Q L+ V VSASRF NDP+FAP+ ATVITAEQIREAGI N N Sbjct: 18 LVSALATLSFPAVAQVETGQKLTPVTVSASRFENDPSFAPIGATVITAEQIREAGIGNVN 77 Query: 86 EAIRKLGGVYGRQSLAGPQDFPLDLRGFGTNGDQNMVVLVDGVRISENELSTPLLSSIPI 145 EAIRK+GGVYGRQS G D+ LDLRGFG DQNMVVLVDG+RISENE + PL+S+IPI Sbjct: 78 EAIRKIGGVYGRQSPYGTSDYSLDLRGFGATSDQNMVVLVDGIRISENEQAVPLMSAIPI 137 Query: 146 ESIERIEIVRGGSSVLYGSGATGGTIQIITRRPQANAGHGTVLGEVGSNGLRAGRAVLAR 205 ++IERIEIVRGGSSVLYG GATGGTIQIIT++ A A ++ E+GS + RA LA+ Sbjct: 138 DAIERIEIVRGGSSVLYGEGATGGTIQIITKKGLAGATRASLFAELGSFNSKEVRASLAK 197 Query: 206 AWDNMSIDASYGKSHADNWRDNSRANQENFATTVQWFASDWRFGLRANLARADFGLPGSL 265 WDN SIDA+ H DN+RDN++ Q+NF+ ++QW D R GLR AR D GL GSL Sbjct: 198 GWDNFSIDANLSGIHTDNYRDNNKLRQDNFSGSMQWAFKDGRIGLRVASARQDSGLAGSL 257 Query: 266 SQAQYDANARQTTKPLDHGSYDNDSITAFLERRFGAFDVAAELAHREKIARSTY------ 319 + AQ+ N RQ T PLD+ S D++ T F E+R G +++AA+L++R+++ +++Y Sbjct: 258 TSAQFAQNPRQATTPLDYASIDSNLYTIFAEKRLGDWELAADLSYRDRVVKTSYSPFLQP 317 Query: 320 VSSGSSSQVNIRSTQFSPRLRHLIERGPWKNEAIAGIDLAEWSSFNNASYGN---SDASQ 376 + G S + +TQFSPR R+L + G KNE + G+D ++ +S +S GN + Q Sbjct: 318 LVQGPVSTYDGHATQFSPRARYLSQVGAIKNEFVVGLDFSD-ASRRVSSDGNPLVKNGDQ 376 Query: 377 HSKALYLRDEIEFDHNARLAAGVRRELFTQQSNSGA-YGRTSAVNAWDVQASYAPLPLLR 435 S+A+YL+DE+ F +AR+A G R E F Q G Y + ++NAWD+Q SY P+ Sbjct: 377 KSQAIYLKDELRFG-DARVAVGARHEQFDQSFRGGVPYDQKFSLNAWDLQGSYQLTPIAS 435 Query: 436 GFTKIGQSYRLATPDENGFTALPIGAVLKPQVSHDLELGATLGNAARQLTLRWFRHRVRD 495 F K G+SYR+A D+NG+T + L+PQVS+D ELGATLGNA ++LT + FRHR+++ Sbjct: 436 IFAKAGRSYRVANVDDNGYTQNNV--PLRPQVSNDYELGATLGNANQKLTAKLFRHRLKN 493 Query: 496 ELYYDP-TANGGF----GANSNLAATRHQGVELEGRVQLSETLGWSATYQHINARFDEGD 550 E+YYDP T GF GAN NL T +G+E+E +L+ET S QH++A+F EG Sbjct: 494 EIYYDPLTPPCGFGFCAGANVNLDPTEREGIEIEASTRLAETFTLSTVLQHVSAKFIEGP 553 Query: 551 NSGKQLALVPANTLSTRINWKSGQ-HSADVGARWVDRQRMGNDFANTC-ARMPSFTSFDA 608 +G+++ LVP NT + R+NW G H+AD+G +WVD+QR DF N C +++P+FT+ DA Sbjct: 554 YAGREMTLVPKNTATLRLNWAPGNGHNADIGLQWVDKQRYAGDFTNACNSKIPAFTTLDA 613 Query: 609 RYALRVSAWEFAVTGTNLANRKYYSQAY-DCSGGAVSGIYPEDGRAIKFTARYDF 662 RYA+RV WEFAV G NL ++ YY+QAY +CS A IYPE GR+++ + R DF Sbjct: 614 RYAVRVGTWEFAVRGANLTDKNYYTQAYGECSSDA--SIYPEAGRSVRVSVRKDF 666 >gi|152980274|ref|YP_001355313.1| FecA iron(III) dicitrate transport protein [Janthinobacterium sp. Marseille] Length = 707 Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 157/700 (22%), Positives = 268/700 (38%), Gaps = 93/700 (13%) Query: 19 LRTSTALILSTLIPACWAGA----ATADLAQPLSAVVVSA----SRFPNDPAFAPVAATV 70 L+ S A+ L+ ++ + A T D L A+ VS + N A TV Sbjct: 15 LKCSAAVSLAVMVMSGMVHAQQATTTGDEPATLEAIQVSGDLLGTGLQNSVKRYAGARTV 74 Query: 71 ITAEQIREAGIDNANEAIRKLGGVY---GRQSLAGPQDFPLDLRGFGTNGDQNMVVLVDG 127 + E+I +G + ++ +R++ GV S + +RG +L+DG Sbjct: 75 VKKEEIENSGAASISDVMRRIPGVQVSDNSGSAGSAISLNVGVRGLAGRYSPRSTILLDG 134 Query: 128 VRISENELSTPLLSSIPI--ESIERIEIVRGGSSVLYGSGATGGTIQIITRR-PQANAGH 184 + ++ P LS P+ ++E +++VRGG +V YG GG I TR P Sbjct: 135 IPMANAPYGQPQLSFAPVSLNNVESVDVVRGGGAVRYGPQNVGGIINFKTRSIPTTPGAT 194 Query: 185 GTV------LGEVGSNGLRAGRAVLARAWDN-MSIDASYGKSHADNWRDNSRANQENFAT 237 G V + GSN + A +N + Y +WR S + A Sbjct: 195 GDVSIRQNDYSKGGSNTQYS--AFAGNQLENGLGFAVLYSGMSGSDWRVGSDEKVNDLAL 252 Query: 238 TVQWFASDW-----RFGLRANLARADFGLPGSLSQAQYDANARQTTKPLDHGSYDNDSIT 292 ++ S +F +R PG L+ AQY+A+ Q T+P D+ S D T Sbjct: 253 KFRYELSPTSEIYGKFSYYDVTSRT----PGGLTVAQYNADPFQNTRPTDYWSGDR---T 305 Query: 293 AFLERRFGAFDVAAELAHR----EKIARST-YVSSGSSSQVNI----RSTQ---FSPRLR 340 AF E R E +ST Y + +++ V+I RS Q PR Sbjct: 306 AFDIGYINTISDTQEFEIRTYYNESNRQSTLYTVNRTTNAVSIQHQPRSYQTLGIEPRYT 365 Query: 341 HLIERGPWKNEAIAGI--------DLAEWSSFNNASYGNS---DASQHSKALYLRDEIEF 389 G N+ G D S + G D S + ++Y+ D+I F Sbjct: 366 QRFNIGNTTNDVTVGYRYIRERGDDNVYSESVTTGALGAQTTFDNSTDAHSIYIDDKIAF 425 Query: 390 DHNARLAAGVRRELFTQQSNSGAYGRTSAVNAWDVQASYAPLPLLRG----------FTK 439 R+ GVR E NS + RT+ + ++V+ + PLP L F Sbjct: 426 GA-WRITPGVRFE----HINSLRHDRTTGAD-FEVKNN-KPLPSLNVAYLLTQDITLFAN 478 Query: 440 IGQSYRLATPDENGFTALPIGAVLKPQVSHDLELGATLGNAARQLTLRWFRHRVRDELYY 499 G S+ + + + G LKP+++ +E GA ++Q++ +R + Sbjct: 479 YGTSFGVVQNTQ--LNTMTPGNPLKPELAKTVEAGARW--KSKQVSAEITAFNIRFDNQI 534 Query: 500 DPTANGGFGANSNLAATRHQGVELEGRVQLSETLGWS-----ATYQHINARFDEGDNSGK 554 +G A NL T H+G+E + S A Y + A + G +G Sbjct: 535 QSVGSGANLAFFNLGKTEHKGIETAVDYTFDKAGPMSGFNAFANYTYTRATLESGAFAGN 594 Query: 555 QLALVPANTLSTRINWKSGQ-----HSADVGARWVD-RQRMGNDFANTCARMPSFTSFDA 608 + NT + + +++G S +++ D R + +P F ++A Sbjct: 595 DVPFYSRNTDTVGMRYETGPWGFNLSSTHQSSQFADERNTVAESVNGENGLIPGFRLWNA 654 Query: 609 RYALRV---SAWEFAVTGTNLANRKYYSQAYDCSGGAVSG 645 + + E NL +++Y+++ D + G + G Sbjct: 655 QVNWKSPNKKGLEILAGLNNLTDKRYFTRTTDGNLGKLVG 694 >gi|152981258|ref|YP_001355221.1| outer membrane receptor [Janthinobacterium sp. Marseille] Length = 718 Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 14/142 (9%) Query: 45 QPLSAVVVSASRFPNDPAFAPVAATVITAEQIREAGIDNANEAIRKLGGVYGRQSLAGPQ 104 Q L+ VVVSAS F AP + T+IT EQ+ +++ EA+R + GV + Sbjct: 55 QHLAEVVVSASGFEQAIKDAPASITIITREQLETNRVNSVAEALRGVEGVDVGDAPGKTG 114 Query: 105 DFPLDLRGFGTNGDQNMVVLVDGVR------ISEN---ELSTPLLSSIPIESIERIEIVR 155 + +RG + + ++L+DG R ++ N E ST + P +IERIE++R Sbjct: 115 GMNISMRGMNS---RFTLILIDGRRQNTAGSVTPNGFGETSTSFMP--PPSAIERIEVIR 169 Query: 156 GGSSVLYGSGATGGTIQIITRR 177 G S LYGS A GG I IITR+ Sbjct: 170 GPMSTLYGSDAMGGVINIITRK 191 >gi|152981186|ref|YP_001352782.1| hypothetical protein mma_1092 [Janthinobacterium sp. Marseille] Length = 623 Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 4/153 (2%) Query: 45 QPLSAVVVSASRFPNDPAFAPVAATVITAEQIREAGIDNANEAIRKLGGVYGRQSLAGPQ 104 Q L V+V+ASR + VIT+E+I+++G + + +++ G+ ++ Sbjct: 38 QSLEPVLVTASRTAQKASDVLSDNLVITSEEIQQSGQSSLIDLLQRKRGIEITRNGGPGT 97 Query: 105 DFPLDLRGFGTNGDQNMVVLVDGVRISENELSTPLLSSIPIESIERIEIVRGGSSVLYGS 164 + LRG + + +++L+DGVR + P SSIP+ I+RIE+V G S +YG+ Sbjct: 98 SSTVYLRG---SSSKQIILLIDGVRSASATTGEPSWSSIPLSQIDRIEVVFGPLSSMYGA 154 Query: 165 GATGGTIQIITRRPQANAGHGTVLGEVGSNGLR 197 ATGG IQ+ T++ A A H T G+ G + Sbjct: 155 DATGGVIQVFTKQ-GAGAPHVTASAGAGTYGTK 186 >gi|152982643|ref|YP_001351756.1| TonB-dependent receptor [Janthinobacterium sp. Marseille] Length = 717 Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 109/263 (41%), Gaps = 24/263 (9%) Query: 16 RFVLRTSTAL-ILSTLIPACWAGAAT-------ADLAQPLSAVVVSASRFPNDPAFAPVA 67 R VL T L L L PA A T + A L + + S P P + Sbjct: 16 RAVLYTHCTLGCLLVLNPASAADTTTLPGITVSPEQAGTLKSPASTGSNLDLTPMQTPAS 75 Query: 68 ATVITAEQIREAGIDNANEAIRKLGGVYGRQSLAGPQDFPLDLRGFGTNGDQNMVVLVDG 127 +VIT EQ+ + G N +AI + G+ G G L RGF +++ L DG Sbjct: 76 VSVITREQLEQRGDANLVDAITRSAGISG-MGHPGNSGSSLSARGF--TDTTSVMRLYDG 132 Query: 128 VRISENELSTPLLSSIPIE--SIERIEIVRGGSSVLYGSGATGGTIQIITRRPQANAGHG 185 R + S P + SI+RIE++RG +SV+YG GA G + +I ++P Sbjct: 133 TRQYGG-----VGVSFPFDTWSIDRIEVLRGPASVIYGDGAIGAVVNVIPKKPTRGPIQN 187 Query: 186 TVLGEVGS-NGLRAGRAVLARAWDNMSIDASYGKSHADNWRDNSRANQENFATTVQW-FA 243 V +G+ N R G D +S +D W D + +F+ +Q + Sbjct: 188 EVQATIGTDNTQRLGFGSGGAINDKLSYRVDLSGDRSDGWVDMGDSRNLSFSGALQLDVS 247 Query: 244 SDWRFGLRANLARAD----FGLP 262 +D+R L R + FG P Sbjct: 248 ADFRLKLSYAQGRQEPMRYFGTP 270 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.132 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,542,048 Number of extensions: 63636 Number of successful extensions: 245 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 241 Number of HSP's successfully gapped: 9 Length of query: 662 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 573 Effective length of database: 891,988 Effective search space: 511109124 Effective search space used: 511109124 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)