BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3057.p (260 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982657|ref|YP_001352784.1| ABC-type cobalamin/Fe3+-siderop... 170 9e-44 gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport ... 91 1e-19 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 90 1e-19 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 87 1e-18 gi|152982291|ref|YP_001353653.1| ABC-type transport system, ATPa... 83 1e-17 >gi|152982657|ref|YP_001352784.1| ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Janthinobacterium sp. Marseille] Length = 256 Score = 170 bits (430), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 106/253 (41%), Positives = 139/253 (54%), Gaps = 3/253 (1%) Query: 5 LQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQWSLQ 64 ++ ++ L R+L++ LDW V PGE WCV+GRNG GKSTLL GL GQ L Sbjct: 1 MKTIKLKLSIADRVLVDALDWQVGPGECWCVIGRNGAGKSTLLRTLVGLRDADGGQLELN 60 Query: 65 GQPLTQLAPDLMARWRGLLLQHQYDAFAMPLIDAVLAGRFVHH-GGWSRRDEDRTLAMRA 123 G+ L + +AR R L Q + DAF +I+ VL R +H + D D A A Sbjct: 61 GRALAKWPLQDLARERSYLPQGRSDAFGYRVIETVLTARHPYHESAYWESDADYAAAHTA 120 Query: 124 LEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSHQDIAAQLQIMRLLR 183 L+ + LA D+ LSGGERQRVA+A +LAQD L LLDEPTS D+A Q+ +M LL Sbjct: 121 LQIMDADTLAERDVRSLSGGERQRVAIAAVLAQDTPLMLLDEPTSALDLAHQVSVMGLLS 180 Query: 184 TLA-AQGKGVVASCHDINLASRFASHILLLGGQRRW-AGPTAEVMRIDALEAAFACSFRQ 241 L Q K VV HD+NLA A+H LLL G RW AGP AEVM+ L Sbjct: 181 RLCREQQKAVVMVSHDLNLAHSVATHALLLMGDGRWHAGPVAEVMQASLLSECLGHPIEI 240 Query: 242 IDDAEISYFIPLN 254 + + + ++ + Sbjct: 241 VQHGKRTIYLAVE 253 >gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 262 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 109/215 (50%), Gaps = 9/215 (4%) Query: 4 LLQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQWSL 63 ++Q VS++ G L + G+F +LG +G GKSTLL + AG + Sbjct: 1 MIQLNDVSVRYGDTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTIDV 60 Query: 64 QGQPLTQLAPDLMARWR--GLLLQ-HQYDAFAMPLIDAVLAGRFVHHGG----WSRRDED 116 G L Q L A R G++ Q HQ A L + VL GR +H + E+ Sbjct: 61 VGLGLLQNRRVLQAHRRQTGMVFQQHQLIARRTALQN-VLMGRLGYHTTLRSLFPLSQEE 119 Query: 117 RTLAMRALEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSHQDIAAQL 176 + + +RAL++VGL A + QLSGG++QRV +A L Q P L L DEP + D A Sbjct: 120 QRIGLRALDRVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPVASLDPATSE 179 Query: 177 QIMRLLRTLAAQ-GKGVVASCHDINLASRFASHIL 210 +++ +LR + + G V S H ++LA +++ I+ Sbjct: 180 KVLEILRQICKEDGISAVVSLHQVDLALKYSDRIV 214 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 109/212 (51%), Gaps = 6/212 (2%) Query: 4 LLQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQWSL 63 L+ V GS +L+G+ V PGE ++G++G GKSTLL GL G S+ Sbjct: 3 LIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISV 62 Query: 64 QGQPLTQLAPDLMA-RWRGLLLQHQYDAFAMPLI--DAVLAGRFVHHGGWSRRDEDRTLA 120 G L + +L R + ++ Q++ F + + +++ V G S +D R LA Sbjct: 63 AGSHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVK--GVSEKDA-RALA 119 Query: 121 MRALEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSHQDIAAQLQIMR 180 M+ LE+VGL+ + QLSGG++QRVA+A L+ +P L DE TS D +++ Sbjct: 120 MKNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLN 179 Query: 181 LLRTLAAQGKGVVASCHDINLASRFASHILLL 212 ++R LA +G ++ H++ A ++ + Sbjct: 180 VVRGLAHEGMTLIMVTHEMRFAREVCDRVVFM 211 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 105/235 (44%), Gaps = 17/235 (7%) Query: 3 CLLQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQWS 62 +L VS + G L ++ + G+ + ++G NG GK+T + GL G + Sbjct: 5 IILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFE 64 Query: 63 LQGQPLTQLAPDLMARWRGLLLQHQYDAFA-MPLIDAVLAGRFV-----------HHGGW 110 L G+P + AP +A+ F M ++ V+ GR V HH Sbjct: 65 LAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAA 124 Query: 111 SRRD-EDRTLAMRALEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSH 169 R + E R AM LE VG+A A LS G+++R+ +A LA DP L LDEP + Sbjct: 125 RREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAG 184 Query: 170 QDIAAQLQIMRLLRTLAAQGKGVVASCHDINLASRFASHILLLGGQRRWAGPTAE 224 + +L + LL + A+GK ++ HD+ L I +L + P AE Sbjct: 185 MNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLD----YGKPIAE 235 >gi|152982291|ref|YP_001353653.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 229 Score = 83.2 bits (204), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 9/186 (4%) Query: 19 LLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQWSLQGQPLTQLAPDLMAR 78 LL+ + ++ + + + G NG GKSTL+ AGL QG+ + QL+P + Sbjct: 19 LLDIENLSIAQAQAYVLTGSNGSGKSTLMRILAGLESADTADVKFQGETV-QLSPYPRSM 77 Query: 79 WRGLLLQHQYDAFAMPLIDAVLAGRFVHHGGWSRRDEDRTLAMRALEQV---GLAALAGA 135 ++ HQ+ P++ + + +G R +A + E + G+A L + Sbjct: 78 RDAIVYVHQH-----PVMFSTSVEENIAYGLSVRGVPKNIIAEKVEEAIAWAGIAHLRAS 132 Query: 136 DLLQLSGGERQRVALATLLAQDPALYLLDEPTSHQDIAAQLQIMRLLRTLAAQGKGVVAS 195 LSGGE+QRVALA P L LLDEPT++ D AA+ Q++ L+ TL +G V+ + Sbjct: 133 VPSFLSGGEKQRVALARARVLSPKLLLLDEPTANLDGAAREQVIALIPTLVNEGGSVIMA 192 Query: 196 CHDINL 201 CHD +L Sbjct: 193 CHDRDL 198 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 564,230 Number of extensions: 21565 Number of successful extensions: 256 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 49 Length of query: 260 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 179 Effective length of database: 921,564 Effective search space: 164959956 Effective search space used: 164959956 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)