BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3054.p
         (298 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981409|ref|YP_001352796.1| segregation and condensation pr...   444   e-126

>gi|152981409|ref|YP_001352796.1| segregation and condensation
           protein A [Janthinobacterium sp. Marseille]
          Length = 292

 Score =  444 bits (1141), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/279 (80%), Positives = 255/279 (91%)

Query: 20  ADAIDITPAGQQDSTPDVIDGVALARLYGEPLFQLPNDLYIPPDALEVFLEAFQGPLDLL 79
           + A D+   G+ D+TPDVIDGVA ARLYGEPLF++P DLYIPPDALEVFLEAF+GPLDLL
Sbjct: 14  SSAPDLVVEGRPDTTPDVIDGVAYARLYGEPLFRMPTDLYIPPDALEVFLEAFEGPLDLL 73

Query: 80  LYLIRKQNFNILDIPLAQVTAQYLEYVEQIRKQNLELAAEYLLMAAMLIEIKSRMLLPAK 139
           LYLIRKQNFNILDIP+AQVT QYL+YV+QIR  NLELAAEYLLMAAMLIEIKSRMLLP +
Sbjct: 74  LYLIRKQNFNILDIPMAQVTKQYLQYVDQIRLHNLELAAEYLLMAAMLIEIKSRMLLPVR 133

Query: 140 KAEPGEEPEDPRAELVRRLLEYEQIKLAAQELDQLPQVGRDYVRTQVHIEQTVVTRWPEV 199
           KA+ GEE  DPRAELVRRLLEYEQ+KLA+Q++D LPQ+GRDYVRTQ++IEQ++VTRWPEV
Sbjct: 134 KADTGEEAADPRAELVRRLLEYEQMKLASQQIDALPQLGRDYVRTQIYIEQSIVTRWPEV 193

Query: 200 DIDDLKAVWADILKRAKLTQHHHISREELSVREHMTGILRRLQSARFVEFSDLFDPSRGV 259
           ++ DL+  WAD+LKRAKLT HH ISREELSVREHMT ILRRLQS +FVEF+DLFDPSRGV
Sbjct: 194 EVVDLQQAWADLLKRAKLTAHHMISREELSVREHMTAILRRLQSTKFVEFADLFDPSRGV 253

Query: 260 PVVVVNFIALLELAKETLIEITQAEAFAPIYVRLSYSPS 298
           PVVVVNF+ALLELAKETLIEITQAE FAPIYVRL+Y+PS
Sbjct: 254 PVVVVNFVALLELAKETLIEITQAEPFAPIYVRLAYAPS 292


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 534,072
Number of extensions: 19460
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 215
Effective length of database: 914,170
Effective search space: 196546550
Effective search space used: 196546550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)