BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3048.p (346 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 213 1e-56 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 211 4e-56 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 175 4e-45 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 164 1e-41 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 149 2e-37 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 213 bits (543), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 128/364 (35%), Positives = 204/364 (56%), Gaps = 31/364 (8%) Query: 1 MAAISLQGVCKQWGEAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 MA + ++ + +++G+ V I +++G+F LLGPSGCGK+T LR+IAG D P +G I Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQI 60 Query: 61 HIGGQDVTQLPPAQRKISMVFQSYALFPHLNVRDNILFGVRVRKEPRTGYEARLKRVADI 120 + G D+T +PP QR + VFQ+YALFPH+ V NI F + + P+ + ++ + Sbjct: 61 LLDGVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALED 120 Query: 121 LGLTHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 + LT R P +LSGGQ+QRV++ RA++ + L+DEPLS LDAQLR++M+ E+ LQ Sbjct: 121 VRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQ 180 Query: 181 QQLKMTMIYVTHDQTEAMSMADQVILLREGRIEQDAPPADLYAQPATTFAARFIGTPPMN 240 +++ +T IYVTHDQ EA++++ ++ ++ +G++EQ P +Y+ P + F A FIGT N Sbjct: 181 KEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFIGT--CN 238 Query: 241 LLP-----LEAHAEGLSVAGSELILKDLGQTPLHLG------LRPEHIRLADA---GVP- 285 L ++ + L V G + K + +G LRPE +++ GVP Sbjct: 239 LFDGVVTQIDGNMMWLDVPGMGAV-KAFTAPSVTVGSKGTIALRPEKTQVSAEIVRGVPD 297 Query: 286 -----AVVDNVEYFGADTIV------AARIGTAPLLVRAPGQHK-LRAGQAIHLAWHAED 333 V + Y G T+ RI T L A G+ + G A+ +AW + Sbjct: 298 ENHFDGYVKELLYMGGVTVYIVETEGGVRIETM-LANSAIGRPRFFEVGDAVDVAWRVDA 356 Query: 334 QYFF 337 +F Sbjct: 357 GHFL 360 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 211 bits (538), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 106/257 (41%), Positives = 163/257 (63%), Gaps = 6/257 (2%) Query: 3 AISLQGVCKQWGEAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPTSGSIHI 62 +I ++ + KQ+G A+ + + +G+ T LLGPSGCGK+T LR+IAGL++P G + + Sbjct: 2 SIEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 63 GGQDVTQLPPAQRKISMVFQSYALFPHLNVRDNILFGVRVRKEPRTGYEARLK----RVA 118 G+D + +R++ VFQ YALF H+ V +NI FG+RVR E+++K ++ Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKVTKLL 121 Query: 119 DILGLTHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRA 178 +++ L L +R P QLSGGQ+QR+AL RA+ + V L+DEP LDA++R+E+RR +R Sbjct: 122 ELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRR 181 Query: 179 LQQQLKMTMIYVTHDQTEAMSMADQVILLREGRIEQDAPPADLYAQPATTFAARFIGTPP 238 L L +T I+VTHDQ EA+ +ADQ++L+ +G +EQ P D+Y PA+ F F+G Sbjct: 182 LHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFLGN-- 239 Query: 239 MNLLPLEAHAEGLSVAG 255 +NL H L +G Sbjct: 240 VNLFHGRVHEGILQSSG 256 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 175 bits (443), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 93/223 (41%), Positives = 138/223 (61%), Gaps = 6/223 (2%) Query: 17 QAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPTSGSIHIGGQDVTQ----LPP 72 + V + F ++ G+ LLG SGCGK+T LR IAG + +G I +GG++++ P Sbjct: 28 EIVHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIAGRITLGGKELSNAQHTTVP 87 Query: 73 AQRKISMVFQSYALFPHLNVRDNILFGVRVRKEPRTGYEARLKRVADILGLTHLLERRPA 132 R + +VFQ YALFPHL+V DNI FG+R K R+ ++ ++GL ++ P Sbjct: 88 EARHVGVVFQDYALFPHLSVSDNIGFGLR--KLAAAERNGRINKLLALVGLQAQEKKFPH 145 Query: 133 QLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQLKMTMIYVTH 192 +LSGGQQQRVAL RA+ + L+DEP SNLD LR+ + E+R + +++ T + VTH Sbjct: 146 ELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTH 205 Query: 193 DQTEAMSMADQVILLREGRIEQDAPPADLYAQPATTFAARFIG 235 DQ EA ++ADQ+ ++++G I Q +LY +PA F A FIG Sbjct: 206 DQHEAFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFVADFIG 248 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 164 bits (414), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 89/234 (38%), Positives = 139/234 (59%), Gaps = 14/234 (5%) Query: 1 MAAISLQGVCKQWG----EAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPT 56 + AI ++GV K + QA++ ++ + G+F L+G SGCGKST LR++AG + + Sbjct: 11 LPAIDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTS 70 Query: 57 SGSIHIGGQDVTQLPPAQRKISMVFQSYALFPHLNVRDNILFGVRVRKEPRTGYEARLKR 116 SGS ++ G + P + MVFQ Y LFP L V++NI FG R R P+ E Sbjct: 71 SGSANMYGMPIDGPSPER---GMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAY 127 Query: 117 VADILGLTHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREI 176 D++GLT P QLSGG +QRVA+ R + D V LMDEP LDA R+++++++ Sbjct: 128 YTDMVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDL 187 Query: 177 RALQQQLKMTMIYVTHDQTEAMSMADQVILLRE--GRIEQD-----APPADLYA 223 + ++ K+T+++VTH EA+ ++D+V+++ GRIE+D A P D+ A Sbjct: 188 LEIWERTKVTVVFVTHAVEEAVMLSDRVVVMTAGPGRIEEDIKLDLARPRDITA 241 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 149 bits (376), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 134/244 (54%), Gaps = 14/244 (5%) Query: 1 MAAISLQGVCKQWGEAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 M I++ V K +G Q +KGI +V+ G+ ++G SG GKST LR I GL+ GSI Sbjct: 1 MPLIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSI 60 Query: 61 HIGGQDV----TQLPPAQRKISMVFQSYALFPHLNVRDNILFGVRV-----RKEPRTGYE 111 + G + +L + K+ M+FQ + LFPHL+V NI+ + K+ R Sbjct: 61 SVAGSHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARALAM 120 Query: 112 ARLKRVADILGLTHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQE 171 L++V GL+ + P QLSGGQQQRVA+ RA+ + L DE S LD +L E Sbjct: 121 KNLEKV----GLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNE 176 Query: 172 MRREIRALQQQLKMTMIYVTHDQTEAMSMADQVILLREGRIEQDAPPADLYAQPATTFAA 231 + +R L + MT+I VTH+ A + D+V+ + +G++ + P D++A PAT Sbjct: 177 VLNVVRGLAHE-GMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELK 235 Query: 232 RFIG 235 +F+G Sbjct: 236 QFLG 239 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 827,396 Number of extensions: 36079 Number of successful extensions: 303 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 68 Length of query: 346 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 262 Effective length of database: 910,473 Effective search space: 238543926 Effective search space used: 238543926 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)