BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3045.p
         (688 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979917|ref|YP_001352802.1| methionyl-tRNA synthetase [Jant...  1206   0.0  

>gi|152979917|ref|YP_001352802.1| methionyl-tRNA synthetase
           [Janthinobacterium sp. Marseille]
          Length = 700

 Score = 1206 bits (3119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/699 (81%), Positives = 624/699 (89%), Gaps = 12/699 (1%)

Query: 1   MSTSAPRQLFVTTALPYANGAFHIGHIMEYIQADIWVRFQRMQGNEVHFVGADDAHGAPI 60
           MS   PR+LFVTTALPYANGAFH+GHIMEYIQADIWVRFQRMQGNEVHFVGADDAHGAPI
Sbjct: 1   MSKPLPRKLFVTTALPYANGAFHVGHIMEYIQADIWVRFQRMQGNEVHFVGADDAHGAPI 60

Query: 61  MIAAEKANITPQEFVANIAAGRKQYLDGFHIAFDNWSSTDSPENHQLSQDIYRALRDEAK 120
           MIAAEKA +TPQ+FVANIAAGRKQYLDGFHI FDNWSSTDSPENH+LS++IYR LRD+AK
Sbjct: 61  MIAAEKAGLTPQQFVANIAAGRKQYLDGFHIEFDNWSSTDSPENHELSREIYRRLRDDAK 120

Query: 121 LISTKTIDQFYDPVKNMFLPDRYIKGECPKCGTKDQYGDSCEHCSAVYSPTDLKNPYSTL 180
           LI+TK+++QFYDPVK MFLPDRYIKGECPKCGTKDQYGDSCE+CSAVY+PTDLK+PYSTL
Sbjct: 121 LITTKSVEQFYDPVKEMFLPDRYIKGECPKCGTKDQYGDSCENCSAVYAPTDLKHPYSTL 180

Query: 181 SGATPVMKSSEHFFFKLSDPKCVAFLREWALDNNRLQPEVANKAREWLDGEGGLGDWDIS 240
           +GATPV KSS+HFFF+LSDPKCVAFLREWALD  RLQ EVANKA+EWL+GEGGLGDWDIS
Sbjct: 181 TGATPVRKSSDHFFFRLSDPKCVAFLREWALDGQRLQSEVANKAKEWLEGEGGLGDWDIS 240

Query: 241 RDAPYFGIEIPDAPGKYFYVWLDAPIGYLASLKNYFVKTGRDFDAFMADDKTEQYHFIGK 300
           RDAPYFGIEIPDAPGKYFYVWLDAP+GYLA+LKNYF KTGRDFDAFMAD  TEQYHFIGK
Sbjct: 241 RDAPYFGIEIPDAPGKYFYVWLDAPVGYLATLKNYFDKTGRDFDAFMADPSTEQYHFIGK 300

Query: 301 DITYFHTLFWPAMLKFAGRKTPTNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEW 360
           DITYFHTLFWPAMLKFA  K P NVF HGFITVSGEKMSKSRGTGISPLRYL+IGMNPEW
Sbjct: 301 DITYFHTLFWPAMLKFADMKVPNNVFVHGFITVSGEKMSKSRGTGISPLRYLEIGMNPEW 360

Query: 361 LRYYIAAKLNAKVEDVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFEGRVSTQWAT 420
           LRYYIAAKL++KVED+DF  DDF+ARVN+DLIGKY+NIASRAAGFI K+F+GRV+T WAT
Sbjct: 361 LRYYIAAKLSSKVEDIDFTSDDFIARVNSDLIGKYINIASRAAGFITKKFDGRVATDWAT 420

Query: 421 ADDAFLVKLRGVADEIRSLYEQREYGKALRLVMEQADAINAYVDANKPWELAKDSARDAQ 480
           +DDAFL +LR VA EI++LY+QREYGKALR +MEQADAINAYVDANKPWELAKD A++A 
Sbjct: 421 SDDAFLSRLRNVASEIQALYDQREYGKALRAIMEQADAINAYVDANKPWELAKDPAKEAA 480

Query: 481 LHEVCSRLLEAFRILTIYLKPVLPQLAAQVETFLQVQPFQWSDVTAPLADGHVINAYSHL 540
           L EVCSRLLEAFRILTIYLKPVLP LA QVE  L + P +W  +  PL  GH IN Y HL
Sbjct: 481 LQEVCSRLLEAFRILTIYLKPVLPALAKQVEAQLNIAPLEWHHIITPLPHGHQINPYVHL 540

Query: 541 MQRVDPKMLDALFEAPE-------APAAAATEAAES-----AIEELAPEISIDDFAKVDL 588
           M RV+PKMLDALF+ P         P + + +  ++     AIE +APEI IDDFAK+DL
Sbjct: 541 MTRVEPKMLDALFDMPALVDATVGVPTSPSNKDGDTNGNGHAIESIAPEIKIDDFAKIDL 600

Query: 589 RIAKIVNCEAVEGSTKLLRLTLDAGEGRTRNVFSGIASAYKPEELVGKLTVMVANLAPRK 648
           RIAKIVNCE VEGS KLLRLTLD GEGR RNVFSGI SAYKPE+L+GKLTVMVANLAPRK
Sbjct: 601 RIAKIVNCEHVEGSDKLLRLTLDVGEGRMRNVFSGIKSAYKPEDLIGKLTVMVANLAPRK 660

Query: 649 MKFGVSEGMVLAASAKDEKANPGIYVLNPWPGAEPGMRV 687
           MKFG+SEGMVLAASA DEKANPGIY+LNPWPGAEPGMRV
Sbjct: 661 MKFGISEGMVLAASAADEKANPGIYILNPWPGAEPGMRV 699


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,521,981
Number of extensions: 60549
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 598
Effective length of database: 888,291
Effective search space: 531198018
Effective search space used: 531198018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)