BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3043.p (482 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980247|ref|YP_001352803.1| glutamyl-tRNA synthetase [Janth... 812 0.0 gi|152980417|ref|YP_001352219.1| glutamyl-tRNA synthetase relate... 137 1e-33 gi|152980200|ref|YP_001352269.1| glutaminyl-tRNA synthetase [Jan... 69 6e-13 >gi|152980247|ref|YP_001352803.1| glutamyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 463 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/461 (81%), Positives = 421/461 (91%) Query: 22 VRTRFAPSPTGYLHLGGARTALFSWAYARRFGGTFVLRIEDTDVERSTPAAVQAIIEGMQ 81 VRTRFAPSPTGYLH+GGARTALFSWAYAR FGGTFVLRIEDTD+ERSTP AVQAIIEGM+ Sbjct: 3 VRTRFAPSPTGYLHVGGARTALFSWAYARHFGGTFVLRIEDTDLERSTPEAVQAIIEGME 62 Query: 82 WLGLEHDEGPFYQMKRMDRYREVIAQMLEQGTAYYCYCTPEEVEAMRERQRAAGEKPRYD 141 WLGL HDEGPFYQM+RMDRYREVI QML GTAY+CY +PEEVEAMRERQRAAGEKPRYD Sbjct: 63 WLGLHHDEGPFYQMQRMDRYREVIGQMLAAGTAYHCYSSPEEVEAMRERQRAAGEKPRYD 122 Query: 142 GTWRPEPGKTLPAIPEGRKPVVRFKNPQDGEVSWNDVVKGPITISNRELDDLVIARPDGT 201 GTWRPE GKTLPAIPEGRKPVVRF+NP +G+V+W DVVKG ITISNRELDDLVIARPDGT Sbjct: 123 GTWRPEAGKTLPAIPEGRKPVVRFRNPTEGDVTWLDVVKGSITISNRELDDLVIARPDGT 182 Query: 202 PTYNFCVVVDDWDMKITHVIRGDDHVNNTPRQINILKALGGTLPEYGHVPMILGADGEKL 261 PTYNFCV VDD DMKITHVIRGDDHVNNTPRQINIL+ALG TLP YGH+PMILG DGEKL Sbjct: 183 PTYNFCVAVDDSDMKITHVIRGDDHVNNTPRQINILQALGATLPHYGHLPMILGTDGEKL 242 Query: 262 SKRHGAVSVMDYPAQGYLPEAMLNYLARLGWSHGDDEIFSMQQFCEWFDLDHLTKAPAQF 321 SKRHGAVSVMDYPAQGYLPEAMLNYLARLGWSHGDDE+FSM+QF +WFDLDHLTK+PAQF Sbjct: 243 SKRHGAVSVMDYPAQGYLPEAMLNYLARLGWSHGDDEVFSMEQFTQWFDLDHLTKSPAQF 302 Query: 322 NPEKLNWLNNHYIKLADNARLAGLVRPLLEAQGAVFDGAPDLAAVIGLLKDRANTVNEIA 381 NPEKL+WLNNHYIK ADN RLAGLVRP++E GA F+ APDLAAVI L+K+R NT+NE+A Sbjct: 303 NPEKLDWLNNHYIKQADNTRLAGLVRPMMEGLGAQFENAPDLAAVIALMKERVNTLNELA 362 Query: 382 AAALMFYRQPAPDAALVAQHITDAIKPALADFAQRVATVEWTKEAIAPMIKEVLAAHGIK 441 AA++FYRQPA DAAL+AQH+TDAI+PALA + +++ TV W+KEA++ +KEVLAAH +K Sbjct: 363 VAAMLFYRQPAADAALLAQHLTDAIRPALAQYVEQLKTVAWSKEALSATLKEVLAAHKLK 422 Query: 442 MPQLAMPLRLIVAGQLQTPAIDAVLQLFGREAVKARLAAYL 482 MPQLAMPLRL++ GQLQTP+IDAV++LFGRE V ARL L Sbjct: 423 MPQLAMPLRLLITGQLQTPSIDAVVELFGREVVLARLGKNL 463 >gi|152980417|ref|YP_001352219.1| glutamyl-tRNA synthetase related protein [Janthinobacterium sp. Marseille] Length = 293 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/249 (36%), Positives = 131/249 (52%), Gaps = 10/249 (4%) Query: 25 RFAPSPTGYLHLGGARTALFSWAYARRFGGTFVLRIEDTDVERSTPAAVQAIIEGMQWLG 84 RFAPSP+G LH G A+ S+ A+ G +++RIED D R+ A AI++ + G Sbjct: 8 RFAPSPSGPLHAGSLVAAMASYLDAKAHQGQWLVRIEDIDETRTVADATTAIMDALAVFG 67 Query: 85 LEHDEGPFYQMKRMDRYREVIAQMLEQGTAYYCYCTPEEVEAMRERQRAAGEKPRYDGTW 144 ++HD Q +R D Y+ ++ + Y C CT E+ R A G Y GT Sbjct: 68 MQHDGEVVVQSQRKDLYQAAFERL--KDLVYPCGCTRREIADSRLGVAADGAAI-YPGTC 124 Query: 145 RPEPGKTLPAIPEGRKPVVRF--KNPQDGEVSWNDVVKGPITIS-NRELDDLVIARPDGT 201 R L A R VR N + ++++D GP+T E+ D V+ R DG Sbjct: 125 R----HGLAAGKTARTWRVRVPDANENNEAINFDDRWLGPLTQHLASEVGDFVLKRADGF 180 Query: 202 PTYNFCVVVDDWDMKITHVIRGDDHVNNTPRQINILKALGGTLPEYGHVPMILGADGEKL 261 Y VVVDD D ++TH++RG D + +T RQI + + LG P Y HVP++L GEKL Sbjct: 181 WAYQLAVVVDDADQEVTHIVRGTDLLESTGRQIYLQRMLGFPTPHYMHVPVVLNDVGEKL 240 Query: 262 SKRHGAVSV 270 SK+ GA+++ Sbjct: 241 SKQTGALAL 249 >gi|152980200|ref|YP_001352269.1| glutaminyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 582 Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 22/144 (15%) Query: 7 PAPAWFLLAIMTAT------------------QVRTRFAPSPTGYLHLGGARTALFSWAY 48 PAP+ FL I+ A V TRF P P GYLH+G A++ ++ Sbjct: 14 PAPSNFLRGIIEADLAAGKHEKRVGKDGQPLPTVITRFPPEPNGYLHIGHAKSICLNFGL 73 Query: 49 ARRFGGTFVLRIEDTDVERSTPAAVQAIIEGMQWLGLEHDEGP----FYQMKRMDRYREV 104 AR + G LR +DT+ + V II+ ++WLG + EG ++ D+ E+ Sbjct: 74 ARDYAGRCNLRFDDTNPTKEEQEYVDTIIDSVKWLGFDWKEGDKEHLYFASDYFDQLYEM 133 Query: 105 IAQMLEQGTAYYCYCTPEEVEAMR 128 ++ QG AY + E++ R Sbjct: 134 AEYLINQGHAYVDSQSAEDMAKNR 157 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,274,882 Number of extensions: 57759 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 3 Length of query: 482 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 395 Effective length of database: 899,382 Effective search space: 355255890 Effective search space used: 355255890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)