BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3042.p
         (270 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980360|ref|YP_001351930.1| enoyl-CoA hydratase [Janthinoba...    79   4e-16

>gi|152980360|ref|YP_001351930.1| enoyl-CoA hydratase
           [Janthinobacterium sp. Marseille]
          Length = 258

 Score = 78.6 bits (192), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 24/258 (9%)

Query: 15  LATITLNRPDIHNAFDDQLIAHL-IDLITQAGDDARTCVLLLASTGKSFSAGADLAWM-- 71
           +  ITLNRP   NA +D+L+  L + L +  GDD   C+++  S  K+F+AGAD+  M  
Sbjct: 14  VGVITLNRPAALNALNDKLMDELGLALQSFDGDDDIGCMIITGSE-KAFAAGADIGAMAT 72

Query: 72  RRMADASREDNL-RDARKLALLMHTLNSFPAPTLAKVQGAVMGGGVGLVSCCDIVVASEA 130
               D  + D + R+  ++        S   P +A V G  +GGG  L   CD ++A++ 
Sbjct: 73  YTYMDVYKGDYITRNWEQI-------RSVRKPVIAAVAGYALGGGCELAMMCDFIIAADT 125

Query: 131 AFFALSEVKLGLAPAAIS----PYVIAKMGVSQARRYFVSAERFPAACAAAMGLVHEVVP 186
           A F   E+KLG+ P A      P  ++K   S+A    ++A    AA A   GLV  VV 
Sbjct: 126 AKFGQPEIKLGIIPGAGGTQRLPRAVSK---SKAMDLCLTARMMDAAEAERAGLVSRVVA 182

Query: 187 PGELDARTAQLIDTLLANG--PQAMRAAKQLVQVANPLQVTPELSEYTAGVIADLRASAE 244
             +L    A    T++AN   P  M   + + +         E  ++   +     A+A+
Sbjct: 183 ADKLH-EEALAAATVIANMSLPMVMMVKESINRAYET--TLAEGVQFERRLFHSTFATAD 239

Query: 245 GREGLRAFLDKDAPAWTH 262
            +EG++AF++K A  + +
Sbjct: 240 QKEGMQAFIEKRAAHFKN 257


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 626,635
Number of extensions: 24862
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 3
Length of query: 270
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 188
Effective length of database: 917,867
Effective search space: 172558996
Effective search space used: 172558996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)