BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3037.p (305 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982397|ref|YP_001353609.1| LysR family transcriptional reg... 125 3e-30 gi|152980333|ref|YP_001353265.1| LysR family transcriptional reg... 92 5e-20 gi|152980915|ref|YP_001353545.1| LysR family transcriptional reg... 78 8e-16 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 74 1e-14 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 70 2e-13 >gi|152982397|ref|YP_001353609.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 284 Score = 125 bits (314), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 87/285 (30%), Positives = 140/285 (49%), Gaps = 5/285 (1%) Query: 1 MLDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTA 60 M++W +LR+FL + R L AA+KLG T+ RR++ EE VG +LF R + G+ LT Sbjct: 1 MMEWSDLRVFLAIAREGTLGAAARKLGQTQPTMGRRLRALEEAVGHKLFQRGSSGFILTD 60 Query: 61 DGYRLVDYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPH 120 +G ++ +AE++ A +L G + +L G +R+ +++ FGT VLAP LA F +P Sbjct: 61 EGAAVLIHAERMADEAEAFQRQLAGQDQQLEGLLRITSSDWFGTHVLAPVLADFTRMHPR 120 Query: 121 ITVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLARHAPIHS 180 +T+++L R +L++ EAD++ I+ + KL LYA++ +AR Sbjct: 121 VTIELLTDARVFSLARREADLAFRIQPFDEADVAARKLLHMPYGLYAAKG-MAR----PQ 175 Query: 181 TADLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCF 240 D A + + + + + P A A RS + Q G LA+LP Sbjct: 176 AGDGAGSMLVTMDTAFDGAPDAVWLKRLLPHAQIALRSNNRDVQAQMCAHGAGLAVLPRL 235 Query: 241 LAQQSEQLVPVLAQEIAITRSFWLVASSEQRHVARVSALWSYLRE 285 L + L V E R WL + R +AR+ +L L E Sbjct: 236 LGDKFPGLDLVDLGEAPPGRDTWLGYHKDLRQLARLRSLLDLLIE 280 >gi|152980333|ref|YP_001353265.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 293 Score = 91.7 bits (226), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 123/257 (47%), Gaps = 4/257 (1%) Query: 2 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 61 ++ D+L+ F+ + S L AA+ LG S VSR + R EE++ + L R +LT + Sbjct: 3 INSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRALARLEEKLATTLLTRTTRRMELTDE 62 Query: 62 GYRLVDYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPHI 121 G L+ A + + L A E + + SG++R+ A F V+ PH+A F P I Sbjct: 63 GRLLLTKARAILAALDEAEESIRVRRQRPSGRLRIDAASPFILHVIVPHVAEFRELYPDI 122 Query: 122 TVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLARHAPIHST 181 T+++ + +L +H DI++ + L + + AS DYL RH Sbjct: 123 TLELTSNDQIADLLEHRTDIAIRVGELTDSTLHARPLRSGAMAILASPDYLRRHGIPKKP 182 Query: 182 ADLAQHHFIGYID-DLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCF 240 ADLAQH +G++ + S LR+ A ++S A AG+ +A L F Sbjct: 183 ADLAQHETLGFLQYENGNSWPLRHDGGEWLATTPAIYASSGETLRALALAGQGIACLSEF 242 Query: 241 LAQQ---SEQLVPVLAQ 254 + +Q + LVP+LA+ Sbjct: 243 MTKQDIAAGTLVPILAK 259 >gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 77.8 bits (190), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 109/253 (43%), Gaps = 7/253 (2%) Query: 7 LRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGYRLV 66 +++F+ + S AA +L + VSR + EE G++L R LTA G ++ Sbjct: 7 MQVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTAAGAEML 66 Query: 67 DYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPHITVDML 126 Q+ + G +R+ + FG LA +A + P +TVDML Sbjct: 67 PRCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPGVTVDML 126 Query: 127 PMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLARHAPIHSTADLAQ 186 + R VNL + D+++ I + L N + +L+ + A+ YL H L Sbjct: 127 VLDRVVNLVEERIDLAIRISKELDPNLIARRLTVCRSVVCAAPAYLHEHGKPTQAEQLVL 186 Query: 187 HHFI--GYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFLAQ- 243 H+ + Y + E + VA + S + AA AG +A+LP FLA Sbjct: 187 HNCLTHSYYGSVWLLERDKLPVNVAVKGNISANDASSL--LPAALAGAGIAMLPTFLAAP 244 Query: 244 --QSEQLVPVLAQ 254 +S QL+P+L + Sbjct: 245 YIRSGQLLPLLPE 257 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 73.6 bits (179), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/295 (22%), Positives = 122/295 (41%), Gaps = 18/295 (6%) Query: 6 NLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGYRL 65 ++ +F + AA G+ + VSR + R E ++G +LF R +LT G Sbjct: 12 SIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVY 71 Query: 66 VDYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPHITVDM 125 + + + L A ++ G K +G +R+ +G + L P L F R P + V++ Sbjct: 72 FEQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQVEV 131 Query: 126 LPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLARHAPIHSTADLA 185 R ++ ++ D+++ P N + KL + L L A+ YL R + DL Sbjct: 132 HISNRNIDFAEEAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSYLKRAGKPKTLEDLQ 191 Query: 186 QHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPC------ 239 +H I + + S R P+ ++ ++ +CA L I+ Sbjct: 192 KHECIQF---ELPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDVLGIVTLARSGAG 248 Query: 240 ------FLAQ---QSEQLVPVLAQEIAITRSFWLVASSEQRHVARVSALWSYLRE 285 F+ + + +LV +L Q A +R F L+ + +RV A +L E Sbjct: 249 LVQTYRFIVEDDLREGRLVELLPQFGATSRPFILLYPHARHLSSRVRAFVDFLME 303 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 84/184 (45%) Query: 7 LRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGYRLV 66 L F+ + R L AA+ L I ++R+ + E ++G +L +R LT++G + Sbjct: 65 LEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSEGEIYL 124 Query: 67 DYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPHITVDML 126 YA ++ + + + + G +R+ AT GFG +AP ++ F R P + V Sbjct: 125 GYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQVEVQFE 184 Query: 127 PMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLARHAPIHSTADLAQ 186 + ++L ++ D+++ KL L AS YL RH + ADL++ Sbjct: 185 VSDKPIDLVENGFDLAIRFGTLPDTRLNARKLMSNRRFLCASPIYLERHGTPQTLADLSR 244 Query: 187 HHFI 190 H I Sbjct: 245 HRCI 248 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 683,049 Number of extensions: 26120 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 28 Length of query: 305 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 222 Effective length of database: 914,170 Effective search space: 202945740 Effective search space used: 202945740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)