BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3035.p (502 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 432 e-122 gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 200 1e-52 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 132 4e-32 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 432 bits (1111), Expect = e-122, Method: Compositional matrix adjust. Identities = 226/490 (46%), Positives = 315/490 (64%), Gaps = 9/490 (1%) Query: 2 SQANIPHVPLYLNGEKVQSTAKEWRDVLNPATQEVVARVPFATKEEVDRAVANAKDTFKT 61 + A I H Y+NG ++ +DV NPAT E A+V A+ +V VA AK Sbjct: 3 TSAKIKH---YINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPA 59 Query: 62 WRNTSLAQRMRIMLKFQQLLRENIAPLAELITREHGKTLPDAEGEVMRGLEVVEHACSIT 121 W +T+ +R RI+ KF+ L+ ++ LA ITREHGK DA+GEV RGLEVVE AC + Sbjct: 60 WADTAPLKRARILFKFKDLIEKHHDDLAAAITREHGKVFSDAKGEVTRGLEVVEFACGVP 119 Query: 122 SLQLGELAENVAGGVDVYTLYQPLGVGAGITAFNFPVMLPCFMFPIAVACGNTFVLKPSE 181 L + +N+ GG+D + L QPLGV AGIT FNFP M+P +M P+A+A GNTF+LKPSE Sbjct: 120 QLLKTQFTDNIGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSE 179 Query: 182 QDPTSSLFLVELANQAGLPPGVLNVVHGGPDVANMICDHPDIKAVSFIGSTHVGTHIY-- 239 +DP+ SL + EL QAGLP GV NV+ G + + HPD+KAVSF+GST + +IY Sbjct: 180 RDPSPSLMVAELLQQAGLPDGVFNVLQGDKLAVDGLLQHPDVKAVSFVGSTPIAEYIYAT 239 Query: 240 ---RRASEAGKRAQCMMGAKNHCIVLPDAPKDQAINNLLGAAFGAAGQRCMANSVVVLVG 296 R+ R Q + GAKNH +V+PDA +QA++ L+GAA+G+AG+RCMA SV V VG Sbjct: 240 GAARKGGSYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVG 299 Query: 297 QTRE-WIPEIVERSKTMKVGPGTDRKADVGPLVSKAAKERVERLIASGVEQGAHLLLDGR 355 + + ++ R K++KV G + A++GP+VS A K ++E I +GV+ GA LL+DGR Sbjct: 300 DIADKLVAALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGR 359 Query: 356 NCKVAGSENGNFVGPTVFTGVKPDMDIYTQEIFGPAMCIVELETLDEAIAFINANPNGNG 415 KVAG + G F+G +F V P+M IY +EIFGP +C++ + A+ IN + GNG Sbjct: 360 GLKVAGHDKGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFGNG 419 Query: 416 TSIFTSSGYAARKFQNEIDVGQVGINVPIPVPVAYFSFTGSRASKLGDLGPNGKQAVTFW 475 S+FTS G AR+F ++VG VGINVPIPVP+A+ SF G + S GD G++ + F+ Sbjct: 420 VSLFTSDGNTAREFSRRVEVGMVGINVPIPVPMAWHSFGGWKRSMFGDTHAYGEEGIKFY 479 Query: 476 TQTKTVTARW 485 T+ K++ RW Sbjct: 480 TRYKSIMQRW 489 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 200 bits (509), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 144/459 (31%), Positives = 226/459 (49%), Gaps = 12/459 (2%) Query: 12 YLNGEKVQSTAKEWRDVLNPATQEVVARVPFATKEEVDRAVANAKDTFKTWRNTSLAQRM 71 Y+NG V T K DV NPA + VP +E ++A+ A F W + +R Sbjct: 20 YINGAWV--TGKASFDVNNPADGSKITDVPNLGAQETEQAIQAAHAAFPAWAAKTGKERA 77 Query: 72 RIMLKFQQLLRENIAPLAELITREHGKTLPDAEGEVMRGLEVVEHACSITSLQLGELAEN 131 IM + L+ N LA L+T E GK L ++ GEV+ G +E G++ + Sbjct: 78 GIMRIWFDLIIANADDLAALMTAEQGKPLIESRGEVIYGASFIEWFAEEAKRVSGDVMAS 137 Query: 132 VAGGVDVYTLYQPLGVGAGITAFNFPVMLPCFMFPIAVACGNTFVLKPSEQDPTSSLFLV 191 T+ QP+GV A IT +NFP+ + A+A G T V+KP+EQ P S+L + Sbjct: 138 TWSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTPLSALAIA 197 Query: 192 ELANQAGLPPGVLNVVHGGPD----VANMICDHPDIKAVSFIGSTHVGTHIYRRASEAGK 247 ELA++AG+PPGV+NVV D V ++C P ++ VSF GST VG + + + K Sbjct: 198 ELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQCAPTVK 257 Query: 248 RAQCMMGAKNHCIVLPDAPKDQAINNLLGAAFGAAGQRCM-ANSVVVLVGQTREWIPEIV 306 + +G IV DA D A+ L + + AGQ C+ N V ++ ++ Sbjct: 258 KIGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDTFVQKLG 317 Query: 307 ERSKTMKVGPGTDRKADVGPLVSKAAKERVERLIASGVEQGAHLLLDGRNCKVAGSENGN 366 + +KVG G ++ GPL+ A ++VE+ ++ V +GA ++ G+ + G Sbjct: 318 AGAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITGGKQHAL----GGY 373 Query: 367 FVGPTVFTGVKPDMDIYTQEIFGPAMCIVELETLDEAIAFINANPNGNGTSIFTSSGYAA 426 F PTV + + PDM I +E FGP +++ +T DEA+A N G + ++ Sbjct: 374 FYEPTVLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSRDIGRV 433 Query: 427 RKFQNEIDVGQVGINVPIPVPVAYFSFTGSRASKLGDLG 465 + +++ G VGIN + + F G + S LG G Sbjct: 434 WRVAEKLEYGMVGINTGL-ISNEVAPFGGVKQSGLGREG 471 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 121/439 (27%), Positives = 199/439 (45%), Gaps = 59/439 (13%) Query: 27 DVLNPATQ-EVVARVPFATKEEVDRAVANAKDTFKTWRNTSLAQRMRIMLKFQQLLRENI 85 +V NPA +VV V A ++ A+ +A TW+ +A+R I+L+ L +++ Sbjct: 601 EVRNPANHADVVGTVQQADAAVLELALQHATSGINTWQAKPIAERAAILLQAADLFQQHA 660 Query: 86 APLAELITREHGKTLPDAEGEVMRGLEVVEHACSITSLQLGELAENVAGGVDVYTLYQPL 145 L L+ RE GKTLP+A GE+ ++ + + A+ +A + QPL Sbjct: 661 TELIALLVREAGKTLPNAIGELREAIDFLRYYS----------AQAIASDAN-----QPL 705 Query: 146 GVGAGITAFNFPVMLPCFMFPIAVACGNTFVLKPSEQDPTSSLFLVELANQAGLPPGVLN 205 G+ A I+ +NFP+ + A+A N + KP+EQ P + V+L +QAG+P L Sbjct: 706 GLVACISPWNFPLSIFTGQVSAALAAANVVLAKPAEQTPLIACRAVQLLHQAGVPENALL 765 Query: 206 VVHG-GPDVANMICDHPDIKAVSFIGSTHVGTHIYR----RASEAGKRAQCM--MGAKNH 258 + G G + + P + AV F GST V I R R+ GK + G +N Sbjct: 766 FLPGSGETIGAQLVTDPRVSAVVFTGSTQVAQSIQRKLVQRSISEGKDIPLIAETGGQNT 825 Query: 259 CIVLPDAPKDQAINNLLGAAFGAAGQRCMANSVVVLVGQTREWIPEIVERS-KTMKVGPG 317 IV A +Q + +++ +AF +AGQRC A V+ L E +++ + + +++G Sbjct: 826 MIVDSSALCEQVVRDVISSAFDSAGQRCSALRVLCLQDDIAEQTLQMLHGAMQELRIGRP 885 Query: 318 TDRKADVGPLVSKAAKERVERLIASGVEQGAHLLLDGRNCKVAGSE---------NGNFV 368 DVGP++ A+ AHL R + AG + NG+FV Sbjct: 886 DHLATDVGPVIDAEAQ--------------AHLQAYIRQAQAAGKQVRQLPLPVTNGSFV 931 Query: 369 GPTVFTGVKPDMDIYTQEIFGPAMCIVELETLDEAIAFINANPNGNG------TSIFTSS 422 P + D++ +E+FGP + ++ D ++ N G G T I + Sbjct: 932 APCIIE--IADINELQREVFGPVLHVLRYRRDDLPQLLMDINSTGFGLTLGIHTRIDETI 989 Query: 423 GYAARKFQNEIDVGQVGIN 441 Y R Q VG + +N Sbjct: 990 DYVVRHAQ----VGNIYVN 1004 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,174,786 Number of extensions: 49579 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 147 Number of HSP's successfully gapped: 3 Length of query: 502 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 415 Effective length of database: 899,382 Effective search space: 373243530 Effective search space used: 373243530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)