BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3034.p (297 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980168|ref|YP_001352071.1| 2-hydroxy-3-oxopropionate reduc... 162 2e-41 gi|152980427|ref|YP_001352509.1| 3-hydroxyisobutyrate dehydrogen... 135 3e-33 gi|152980331|ref|YP_001351960.1| 2-hydroxy-3-oxopropionate reduc... 114 7e-27 >gi|152980168|ref|YP_001352071.1| 2-hydroxy-3-oxopropionate reductase [Janthinobacterium sp. Marseille] Length = 295 Score = 162 bits (411), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 106/288 (36%), Positives = 156/288 (54%), Gaps = 10/288 (3%) Query: 3 ANIVFIGLGNMGLPMAQNLVKAGFSVSGHDLVKASVDKLVAVGGKTEADSMAAVAK-ADV 61 A + FIGLG MG PMA NL K G + HD KA +L+ GG T S A VAK AD+ Sbjct: 2 AKVGFIGLGIMGAPMALNLQKGGHQLFLHDQ-KAPAQELID-GGATVCKSGAEVAKSADI 59 Query: 62 VITMLPASRHVESLYLGDAGVLASAKPGALLIDCSTIAPEAARKVAAAAKARGFDMLDAP 121 +ITM+P + HV+++ + GV A G +++D S+I+P A ++ A A G + LDAP Sbjct: 60 IITMVPDTPHVDAVLFAENGVAAGLSKGKIVVDMSSISPIATKEFAKKINALGCEYLDAP 119 Query: 122 VSGGTNGATAGTLTFMVGGSAQAFEAAQPYLQKMGKAIYHAGESGSGQTVKVCNNMLLGI 181 VSGG GA A +LT M+GGS AF +P + MGK I G +G GQT KV N +++ + Sbjct: 120 VSGGEVGAKAASLTIMIGGSEAAFNTVKPLFELMGKNITLVGGNGDGQTTKVANQIIVAL 179 Query: 182 LMIGTSEAIRLGMANGMDPKVLSEIMSKSSGRNWTLEVYNPCPGVMETAPASKAYAGGFG 241 + SEA+ G DP + + + + LEV+ + + GF Sbjct: 180 NIQAVSEALLFASKAGADPAKVRQALMGGFANSRILEVHG-------ERMVKRTFNPGFR 232 Query: 242 VDLMLKDLGLAVENALATNCAIPLGSTARNLYDIHSMNGAGKLDFSSI 289 ++L KDL LA++ A A ++P + + L + + NG LD S++ Sbjct: 233 IELHQKDLNLALQGAKAMGVSLPNTANTQELMNACAANGMSGLDHSAL 280 >gi|152980427|ref|YP_001352509.1| 3-hydroxyisobutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 298 Score = 135 bits (340), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 139/288 (48%), Gaps = 9/288 (3%) Query: 4 NIVFIGLGNMGLPMAQNLVKAGFSVSGHDLVKASVDKLVAVGGKTEADSMAAVA-KADVV 62 NI FIG+GNMG PMA L + GFS++ +D + + G A S A V AD V Sbjct: 6 NIGFIGIGNMGAPMAGQLARKGFSLTVYDTHATTANAFAQEHGARVARSAAEVGIGADAV 65 Query: 63 ITMLPASRHVESLYLGDAGVLASAKPGALLIDCSTIAPEAARKVAAAAKARGFDMLDAPV 122 I MLP+ + V + D G+ PG++ ID T AP R ++A G LDAPV Sbjct: 66 IFMLPSDQVVRQVLFTD-GLATQLAPGSIAIDMGTSAPAVTRSISAELATLGIGYLDAPV 124 Query: 123 SGGTNGATAGTLTFMVGGSAQAFEAAQPYLQKMGKAIYHAGESGSGQTVKVCNNMLLGIL 182 GG A +L MV G + E +P MG+ ++ G+ GS +K N + Sbjct: 125 MGGVVFAKDASLDIMVSGDDASIERCRPLFDAMGRKLWPCGDIGSAHVLKAMTNYINACA 184 Query: 183 MIGTSEAIRLGMANGMDPKVLSE-IMSKSSGRNWTLEVYNPCPGVMETAPASKAYAGGFG 241 +I T EA+ +G G+D KV++E I +GR + V P V+ + + G Sbjct: 185 LINTLEAMTIGRKFGLDSKVMAEAIDVMCNGRQHPV-VKKIIPHVL-----THKFGTGMA 238 Query: 242 VDLMLKDLGLAVENALATNCAIPLGSTARNLYDIHSMNGAGKLDFSSI 289 + L+ KD+ +AV++A + A+PLG L+ G D S I Sbjct: 239 MQLIAKDVKIAVDSAHSVGAAVPLGEATEKLWRAACEQIGGSRDHSEI 286 >gi|152980331|ref|YP_001351960.1| 2-hydroxy-3-oxopropionate reductase [Janthinobacterium sp. Marseille] Length = 304 Score = 114 bits (285), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 84/216 (38%), Positives = 118/216 (54%), Gaps = 4/216 (1%) Query: 5 IVFIGLGNMGLPMAQNLVKAGFSVSGHDLVKASVDKLVAVGGKTEADSMAAVAKADVVIT 64 I F+G+G MG PMA L++AG+ V+ + ++ D+L +G AVA AD+VIT Sbjct: 10 IAFLGIGLMGKPMASRLLQAGYPVTAWNRTRSKADELAPLGASVAERVADAVAAADIVIT 69 Query: 65 MLPASRHVESLYLGDAGVLASAKPGALLIDCSTIAPEAARKVAAAAKARGFDMLDAPVSG 124 ML A V + DA L K GAL+ID S+ A++V A A+G +DAPVSG Sbjct: 70 MLEAGPIVAQVI--DAA-LPGLKHGALVIDMSSTRQSEAQEVHAKLAAQGVRFIDAPVSG 126 Query: 125 GTNGATAGTLTFMVGGSAQAFEAAQPYLQKMGKAIYHAGESGSGQTVKVCNNMLLGILMI 184 G GA AG+L M GGSAQ F A+ L MG+ G +G GQ K+CN +++G + Sbjct: 127 GVVGAEAGSLAIMAGGSAQDFAEAEAVLTVMGRPTL-VGPAGCGQIAKLCNQLIVGGTLN 185 Query: 185 GTSEAIRLGMANGMDPKVLSEIMSKSSGRNWTLEVY 220 +EA+ L A G DP + + + LEV+ Sbjct: 186 IVAEALLLAQAGGADPTAVRAAIRGGFAESRILEVH 221 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.131 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 639,701 Number of extensions: 24830 Number of successful extensions: 100 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 3 Length of query: 297 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 214 Effective length of database: 914,170 Effective search space: 195632380 Effective search space used: 195632380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)