BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3030.p
         (397 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981009|ref|YP_001352815.1| hypothetical protein mma_1125 [...   481   e-137

>gi|152981009|ref|YP_001352815.1| hypothetical protein mma_1125
           [Janthinobacterium sp. Marseille]
          Length = 386

 Score =  481 bits (1237), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/380 (61%), Positives = 280/380 (73%), Gaps = 5/380 (1%)

Query: 10  SLDLFCKVVDNYGDIGICWRLARQLAQEHKLAVRLWVDDLVSFQRIWPQVDVQAETQQLA 69
           +L LFC+VVDNYGDIGICWRLARQL QEH++ V LWVDDL SF+RI PQV    E QQ+A
Sbjct: 6   TLHLFCRVVDNYGDIGICWRLARQLQQEHQITVTLWVDDLHSFRRICPQVVPDLELQQVA 65

Query: 70  GVTVQHWRSQEGSYTTADVADLVVEFFGCEIPPGYVEAMAQRPIKPVWFNLEGLSAEAWV 129
           GVTV+HW+SQ+G+YTTADVAD+V+EFF  +IPPGY+ AMAQ   +P WFNLEGL+AE WV
Sbjct: 66  GVTVRHWQSQDGAYTTADVADIVIEFFAVDIPPGYIAAMAQCEPRPRWFNLEGLTAEEWV 125

Query: 130 EGCHTLPSPHRSLKLTKYFFFPGFNERTGGLSFEADLEAQRHAFLAAEQG-PAFLARLGV 188
           EGCH L SPH  L LTK+FFFPGF ++TGGL  EADLE QR  F A      AFLA+ GV
Sbjct: 126 EGCHLLTSPHPRLPLTKHFFFPGFTDKTGGLLREADLEQQRLQFQADPAAMAAFLAQFGV 185

Query: 189 TPDEMAGCKVSLFCYDHAPIAELFAAWQASPLPVTCLVPEGVGRAQIEAFLGAPMRAGTA 248
           T  EMA  +VSLFCY HAP+AELF  WQ+   P+ CLVPEGV    ++AFLG   +AG  
Sbjct: 186 TAAEMAATRVSLFCYPHAPVAELFRVWQSGDAPICCLVPEGVASVAVQAFLGTEAKAGAF 245

Query: 249 ATRAALTVRILPFVPQTDYDKLLWSCDLNFVRGEDSFVRAQWAGKPFIWNIYYQDKNLHH 308
           A+R ALTVR+LPFVPQ DYDKLLW+CD NFVRGEDSFVRAQWAG+PF+W+IY QD+NLHH
Sbjct: 246 ASRGALTVRVLPFVPQQDYDKLLWACDFNFVRGEDSFVRAQWAGRPFVWHIYPQDENLHH 305

Query: 309 TKLNAFLKIYDPATPALVDLNRAWNGAYPGE----PDWHATWQTLRAQLPALNGQAEQWL 364
            KL AFL+ Y  A P+L   +  WNGA   +     DW   W  + A +  ++G++  W 
Sbjct: 306 KKLRAFLQRYAAAVPSLATFSLYWNGAGVTDADETADWSVLWPAVEADMAEISGKSADWQ 365

Query: 365 QKMLANGDWMDNLLGFAARL 384
           ++ML NGD   NLL FA  L
Sbjct: 366 RQMLKNGDLASNLLKFATTL 385


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,011,225
Number of extensions: 42149
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 312
Effective length of database: 906,776
Effective search space: 282914112
Effective search space used: 282914112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)