BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3029.p
         (158 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982016|ref|YP_001354616.1| MarR family transcriptional reg...   142   7e-36
gi|152982012|ref|YP_001355292.1| MarR family transcriptional reg...    53   1e-08

>gi|152982016|ref|YP_001354616.1| MarR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 163

 Score =  142 bits (359), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 68/116 (58%), Positives = 91/116 (78%)

Query: 15  DEALLLDNQLCFAMYSASLAMTKAYKKILAPLEITYPQYLVMLVLWERDDVTVSELGSRL 74
           D A  LDNQLCFA+YS SLAM+K Y+K+L  L +TY QYLVM+VLWE+D++TVS++G RL
Sbjct: 21  DNAPRLDNQLCFALYSTSLAMSKVYRKLLPRLGLTYSQYLVMMVLWEQDELTVSDIGERL 80

Query: 75  FLDSGTLTPLLKRMESMGLLHRKRDAGDERRVVVSLSDAGRALRQQARTVPQQMSC 130
           FLDS TLTPLLKRME+  L+ R R A DER+V+++L+ +G ALR +A  +  ++ C
Sbjct: 81  FLDSATLTPLLKRMEAAELITRVRAANDERQVIITLTKSGDALRSKALEMQGEVLC 136


>gi|152982012|ref|YP_001355292.1| MarR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 156

 Score = 52.8 bits (125), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 13/135 (9%)

Query: 25  CFAMYSASLAMTKAYKKILAPLEITYPQYLVMLVLWERDDVTVSELGSRLFLDSGTLTPL 84
           C   +S  LA+T           IT PQ + +L + E    T+  +G  + L   T+  +
Sbjct: 26  CVEHHSKRLAVTH---------NITSPQLVALLAIAELGPSTLRSIGRAIQLSPSTVVGI 76

Query: 85  LKRMESMGLLHRKRDAGDERRVVVSLSDAGRALRQQART-VPQQMSCMLPALEQV-RQ-L 141
           + R+E  GL+ R+RD  D R V V++++AG+ +   A + +P     +L AL +  RQ L
Sbjct: 77  VDRLEEKGLVQRERDTRDRRNVFVAVTEAGQQVLANAPSALPNGFDSLLGALPETDRQAL 136

Query: 142 VGELKQVRKGLLEAE 156
           +  L+Q    LLEA+
Sbjct: 137 IVTLEQF-ASLLEAK 150


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 331,352
Number of extensions: 11936
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 3
Length of query: 158
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 82
Effective length of database: 940,049
Effective search space: 77084018
Effective search space used: 77084018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)