BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3028.p
         (144 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981507|ref|YP_001354615.1| organic hydroperoxide resistanc...   221   2e-59
gi|152981620|ref|YP_001355022.1| organic hydroperoxide resistanc...   152   1e-38

>gi|152981507|ref|YP_001354615.1| organic hydroperoxide resistance
           protein [Janthinobacterium sp. Marseille]
          Length = 163

 Score =  221 bits (562), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/139 (76%), Positives = 119/139 (85%)

Query: 6   IEKALYTATATATGGREGSAKSSDGVLDVKLSTPKELGGAGGNGTNPEQLFAAGYSACFL 65
           IEK LY A ATATGGR+G A SSDGVLD+KL TPKELGGAGG  TNPEQLFAAGYSACFL
Sbjct: 25  IEKVLYRAHATATGGRDGRAVSSDGVLDIKLGTPKELGGAGGAVTNPEQLFAAGYSACFL 84

Query: 66  GALKFVAGQEKVALPADASITGKVGIGQIPGGFGIEAELNISLPGIDQVVAQDLVNKAHQ 125
           GA+KFV+ +EK+A PADAS+ G VGIGQIP GFGIE EL I+LPG+D+ VAQ LV+KAH 
Sbjct: 85  GAMKFVSAREKIAFPADASVQGNVGIGQIPTGFGIEVELQINLPGLDRAVAQSLVDKAHI 144

Query: 126 VCPYSNATRDNINVTLNLV 144
           VCPYSNATR NI+VTL LV
Sbjct: 145 VCPYSNATRGNIDVTLTLV 163


>gi|152981620|ref|YP_001355022.1| organic hydroperoxide resistance
           protein [Janthinobacterium sp. Marseille]
          Length = 138

 Score =  152 bits (383), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 98/137 (71%), Gaps = 4/137 (2%)

Query: 7   EKALYTATATATGGREGSAKSSDGVLDVKLSTPKELGGAGGNGTNPEQLFAAGYSACFLG 66
            K LYT     +GGR+G+++SSDG LD+KLS+P    G+ G GTNPEQLFAAG+SACF+G
Sbjct: 5   SKVLYTGKTHTSGGRDGTSQSSDGRLDIKLSSP----GSSGAGTNPEQLFAAGWSACFIG 60

Query: 67  ALKFVAGQEKVALPADASITGKVGIGQIPGGFGIEAELNISLPGIDQVVAQDLVNKAHQV 126
           A+   AG+ K+ LPAD ++  +V +    G + ++A LN+S+PG++  V Q LV+ AHQ 
Sbjct: 61  AMGLAAGKMKIKLPADLAVDAEVDLCNADGAYFLQARLNVSVPGLEHDVVQALVDAAHQT 120

Query: 127 CPYSNATRDNINVTLNL 143
           CPYS ATR NI+V +NL
Sbjct: 121 CPYSKATRGNIDVVINL 137


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.312    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 341,723
Number of extensions: 14359
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 144
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 69
Effective length of database: 943,746
Effective search space: 65118474
Effective search space used: 65118474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)