BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3025.p
         (379 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980954|ref|YP_001353703.1| cytochrome bd-I oxidase subunit...   392   e-110

>gi|152980954|ref|YP_001353703.1| cytochrome bd-I oxidase subunit II
           [Janthinobacterium sp. Marseille]
          Length = 384

 Score =  392 bits (1006), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/379 (52%), Positives = 258/379 (68%), Gaps = 1/379 (0%)

Query: 2   IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGIMLPFAAKDDTERRILINSIGPTWEGN 61
           + DY+ L+LIWWA +GVL++GFA+TDGFD G GI+L F  + D ERR++INS+GP WEGN
Sbjct: 6   LIDYDVLRLIWWALIGVLLVGFAVTDGFDLGSGILLLFVGRTDLERRVVINSVGPVWEGN 65

Query: 62  QTWLITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121
           Q WLI  GGA FAAWP +YA AFSGFY+A+  +L  L  RPV F +RSK  DP WR  WD
Sbjct: 66  QVWLILGGGAIFAAWPQLYAVAFSGFYLAMFAILTGLILRPVAFKFRSKREDPAWRARWD 125

Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDSMRVEYTGSFFALLNPFGLLAGLLSVAML 181
           W LF  GFVP LI GVA GN+L GVPF  + +M + Y GSFF LLNPF +L GL+S+AML
Sbjct: 126 WVLFFSGFVPTLIFGVALGNVLQGVPFRLEPTMHIFYDGSFFGLLNPFAVLCGLVSIAML 185

Query: 182 LMHGAAFAFVKTDAAIGERSRKTVIGAALVTVLLFVIGGFWV-AHLPGYRITSMPDANSA 240
           +MHG+A+  +KTD A+  R+R     AA+ T+L + + G  +  ++ GYRI+S  D    
Sbjct: 186 VMHGSAWLQLKTDGAVAGRARNYGSVAAIATILFYAVAGLLLWKYIDGYRISSEIDRFGP 245

Query: 241 FTPLAKTVEVVTGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASGLSVT 300
             PL KTVE   GAWF NYA  P T   PA G  GA+ A +    R    A + S LS++
Sbjct: 246 SNPLLKTVEGHAGAWFANYAAHPWTMAAPAAGFIGALGAFIGLRFRREVFALLCSSLSIS 305

Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTMWDAVSSHKTLGLMFWMVLIFLPLILIYTGWVYR 360
           GIIL+ G S+FPF++PSS+D ++SLT+WD+ SSH TL +M  +  IF+PLI+ YT WVY 
Sbjct: 306 GIILSVGASMFPFILPSSIDPRASLTVWDSSSSHLTLFIMLVVTAIFIPLIVAYTTWVYH 365

Query: 361 VVKGKVTARDIHENEHTAY 379
           V+ GKV  ++I E    AY
Sbjct: 366 VLWGKVDEKEIREETGHAY 384


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.142    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 844,159
Number of extensions: 33230
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 294
Effective length of database: 906,776
Effective search space: 266592144
Effective search space used: 266592144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)