BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3024.p
         (540 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979960|ref|YP_001353704.1| cytochrome bd-I oxidase subunit...   630   0.0  

>gi|152979960|ref|YP_001353704.1| cytochrome bd-I oxidase subunit I
           [Janthinobacterium sp. Marseille]
          Length = 535

 Score =  630 bits (1626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/531 (60%), Positives = 390/531 (73%), Gaps = 7/531 (1%)

Query: 6   EVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGIN 65
           ++VSLSRLQFA TALYHFLFVPLTLGLS +L IME+VYVMTG  I++DMT+FWG LFGIN
Sbjct: 4   DIVSLSRLQFAATALYHFLFVPLTLGLSILLAIMETVYVMTGRVIWRDMTKFWGTLFGIN 63

Query: 66  FAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGWDKLS 125
           FAMGVATGI +EFQFG NWSYYSHYVGDIFG PLAIEGLMAFFME+TFVGLFFFGWDKLS
Sbjct: 64  FAMGVATGIVMEFQFGMNWSYYSHYVGDIFGAPLAIEGLMAFFMEATFVGLFFFGWDKLS 123

Query: 126 RKQHLIVTVLVAVGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQV 185
           +  HLI T  VA+GSN SALWILIANGWM NPVGA FN +TMRME+     V+ NPVAQ 
Sbjct: 124 KVGHLITTWAVAIGSNFSALWILIANGWMQNPVGAVFNPDTMRMEVSDFFAVLTNPVAQA 183

Query: 186 KFVHTVAAGYVTASMFVLGISAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDESG 245
           KFVHTV+AGYV AS+FVLGISAWY+LK R    A RS  VAA FGLAA+LSV+VLGDESG
Sbjct: 184 KFVHTVSAGYVAASIFVLGISAWYVLKGRHLDIAKRSMTVAASFGLAASLSVVVLGDESG 243

Query: 246 YTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNEKEQRTDYAVKIPYVLGLIGTRSVDT 305
           Y + E  K+KLAAIE  W+T  APA  TL G P+++ +   YA+ IP+++GLIGTRS+DT
Sbjct: 244 YLSTEHQKMKLAAIEGMWETQDAPASFTLIGFPDQEARENHYAIHIPFIMGLIGTRSLDT 303

Query: 306 QVLGIKDLKKENEVRIRNGMLAYAALTKLKS--GDK--SPEARADFNKLKKDLGYGLLLK 361
            + GI +L +  E RI NG+ AY AL ++++  G K  S E RA F     DLGY LLL+
Sbjct: 304 TIPGIIELVERAEARIGNGLKAYDALQQIRAQGGTKNISHELRAQFEDNGGDLGYALLLR 363

Query: 362 KYTNNVVDATPEQIALAVDDTIPKVAPMFWSFRGMVGLGFLFLFIFAASFWFLAKKQLAP 421
           +Y ++ + ATPEQI  A  DT+P V P+FWSFR MV +G   + + A  F   A++QL  
Sbjct: 364 RYVDDPLKATPEQIEKAAWDTVPHVWPLFWSFRIMVAIGMFMIALTATFFVLSARRQLDR 423

Query: 422 QRWLLRLAVIAIPLPWIAAELGWVVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGF 481
            RWLL++AV +IPLPWIA E GW+VAE+GRQPW I G+LPT ++ S+L   +L  +LAGF
Sbjct: 424 YRWLLKVAVWSIPLPWIAIEAGWLVAEFGRQPWVIEGVLPTAVAVSNLGITTLLITLAGF 483

Query: 482 ILFYTFLLVVEMILMVKYARLGPSSLHT---GKYYWESKNQDSGPDDVLPP 529
           +  YT LL++E+ L+ K  R GP   H    G       N  S P  V+ P
Sbjct: 484 VAIYTVLLIIELKLLFKIIRKGPVDEHVPNEGVNVVARANPPSAPTSVVEP 534


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,224,905
Number of extensions: 49114
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 452
Effective length of database: 895,685
Effective search space: 404849620
Effective search space used: 404849620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)