BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3021.p (481 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Jant... 319 2e-88 gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing... 201 1e-52 gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 193 2e-50 gi|152982803|ref|YP_001351714.1| two-component system sensor pro... 190 2e-49 gi|152982293|ref|YP_001351978.1| two-component sensor histidine ... 105 6e-24 >gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Janthinobacterium sp. Marseille] Length = 466 Score = 319 bits (817), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 186/465 (40%), Positives = 274/465 (58%), Gaps = 12/465 (2%) Query: 11 WTLTTRVTALFALMTCLVVTGLGLYLDRAAGDALAQRADQALIGRVEHFRNLMHDLYNVE 70 +LT+R+ LF L++ L+ +G+G YL R+ L R DQ L+G++ R+L + ++ Sbjct: 7 MSLTSRIGLLFFLVSVLIFSGVGTYLYRSLAGQLEFRDDQELMGKISLMRHLAEESDSIA 66 Query: 71 QMEQRPALFESMMGNEQDVRIFRRQGEAPFI-QSNPDHLVPPAMQPAPVDQ---PVSAAR 126 + + P F + + I + + I +N D P + P++ P S Sbjct: 67 AIRKDPHYFLDAAASHDRLIIMLKDVDGNIILHTNSDQGSLPTIAVLPLEMNPVPRSITL 126 Query: 127 LLTSERADGVRVRWVSALADVGKGRDTVEIIAAYVMVQEDRM--MRSYRWRIAGAAAAAI 184 L TS G+ R ++A V G V ++A DRM +++YR I AA Sbjct: 127 LWTST---GLTARAIAAQGKVRSGEKIVIVVAR---TASDRMELLKAYRVEIGMAALCGT 180 Query: 185 LLTSLLGFVLLRRGLQPLEAMSQRAAQITPDRLSTRLEQEGMPAELRRVALSFNAMLDRL 244 LL +LLG++L+RRGL+P+ ++ +A+ IT RL TRL+ P EL + +FNAMLDRL Sbjct: 181 LLAALLGYILVRRGLRPVRLIAGQASSITAHRLDTRLDLSSAPQELHELVQAFNAMLDRL 240 Query: 245 EAGYDHLAQFSGDLAHEIRTPINVLMGQSQVALGQRRSPEDYEQLLESNVEELQRLARIV 304 + + L+QFS DLAH++RTP+N LM Q+QVAL Q RS EDY+ LL SNVEE +RL R+V Sbjct: 241 DGSFQRLSQFSADLAHDLRTPLNNLMVQTQVALVQARSVEDYQGLLISNVEEYERLTRMV 300 Query: 305 ENILFLAQADHSTLAVECSALDLQEELAKITDYFEGIADERGMHFALQAQGICQANLDMW 364 E++LFLA+ +H+ + + SAL L EEL +I DYFEG+ADE G+ ++A G A+ + Sbjct: 301 ESMLFLARVEHTHVMLNKSALSLPEELQRIADYFEGLADEAGVRLTVEAGGRVYADAILL 360 Query: 365 RRAVSNLIINAVRYGEPDSIIRIQAEGDASGSRILVDNRSGNVTPQVMARMFDRFYRGDR 424 RRA+ NL+ NA+ Y + I ++ A G+ + V N + Q + +F+RFYRGD Sbjct: 361 RRAIGNLVANAIPYTPRGATIVLKGVMTADGATVSVVNPGAGIAAQHIPHVFNRFYRGDA 420 Query: 425 SRSALTESNGLGLAIVKAIMALHRGTATVECPQPGWIRFSLRFPS 469 +RS S GLGLAIV++IMALH G ATV + G FSL FP+ Sbjct: 421 ARSNSATSTGLGLAIVQSIMALHGGRATVTSEENGLTEFSLIFPA 465 >gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 458 Score = 201 bits (510), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 138/466 (29%), Positives = 230/466 (49%), Gaps = 24/466 (5%) Query: 12 TLTTRVTALFALMTCLVVTGLGLYLDRAAGDALAQRADQALIGRVEHFRNLMHDLYNVEQ 71 +LT R+T LFA + V+ G G + A + A++ L ++ + ++ + ++ Sbjct: 5 SLTARLTTLFAATSVAVLVGFGTLISSAIEEHFAEQDQLLLQNELQLIQKVIKE-KGIDS 63 Query: 72 MEQRPALFESMMGNEQDVRIFRRQGEAPFIQSNPDHLVPPAMQPAP-------VDQPVSA 124 + Q F + N D + R + I S + P D + A Sbjct: 64 ISQT---FGEALHNHPDFYVDVRDIDGKEIYSTLGPFRDAILSREPNIETENDFDVRIDA 120 Query: 125 ARLLTSERADGVRVRWVSALADVGKGRDTVEIIAAYVMVQEDRMMRSYRWRIAGAAAAAI 184 R + RA+ A VG V ++ A M +R + A Sbjct: 121 HREFQAIRAE--------LKASVGS---PVIVVIAVDKAIHTHFMSMFRTTLMLYILVAA 169 Query: 185 LLTSLLGFVLLRRGLQPLEAMSQRAAQITPDRLSTRLEQEGMPAELRRVALSFNAMLDRL 244 + T +LG+ R+GL PL M+ RA +T + R+ + +P E+ +A+ NAMLDRL Sbjct: 170 MATIMLGWWAARQGLSPLRTMAARAQAVTSQNMKERMPVDAVPTEMTDLAVKLNAMLDRL 229 Query: 245 EAGYDHLAQFSGDLAHEIRTPINVLMGQSQVALGQRRSPEDYEQLLESNVEELQRLARIV 304 + L +FS DLAHE+RTPI+ ++ Q+ V L Q RS DY L SN EELQRL + + Sbjct: 230 QNDIARLTEFSADLAHELRTPISNMLTQTHVVLNQSRSAADYRDSLSSNAEELQRLGKTI 289 Query: 305 ENILFLAQADHSTLAVECSALDLQEELAKITDYFEGIADERGMHFALQAQGICQANLDMW 364 ++LFLAQ ++ L++ +E + +++E +A+E+ + + + + M+ Sbjct: 290 SDMLFLAQTENGLALPSVEKLNMAQECQALLEFYEALAEEKEVTLRCEGDAVVIGDRLMF 349 Query: 365 RRAVSNLIINAVRYGEPDSIIRIQAEGDASGSRILVDNRSGNVTPQVMARMFDRFYRGDR 424 RRA++NL+ NA+RY I I+ + +G+ + V+N + ++ +FDRFYR D+ Sbjct: 350 RRALNNLLSNALRYTPSHGTISIKIKAAQAGTVVTVENDGKEIPIEIQPHLFDRFYRADK 409 Query: 425 SR-SALTESNGLGLAIVKAIMALHRGTATVECPQPGWIRFSLRFPS 469 SR + ++S GLGL+I +AIM H G+ +V + FSL FPS Sbjct: 410 SRKKSESDSAGLGLSITRAIMQAHGGSVSVVSGESK-TAFSLYFPS 454 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 193 bits (490), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 174/298 (58%), Gaps = 10/298 (3%) Query: 183 AILLTSLLGFVL----LRRGLQPLEAMSQRAAQITPDRLSTRLEQEGMPAELRRVALSFN 238 A L+ S++ ++ ++ G +P+ +S+ I RL RL+ +P EL +A SFN Sbjct: 186 ATLIVSVIALIVAWCAVQWGHRPIRKVSRDIRAIRSSRLDVRLDPTEVPIELAELAASFN 245 Query: 239 AMLDRLEAGYDHLAQFSGDLAHEIRTPINVLMGQSQVALGQRRSPEDYEQLLESNVEELQ 298 ML R+E G+ LA FS D+AHE+RTP+ L+ Q++VAL Q RS +Y ++L SN+EE + Sbjct: 246 DMLGRIEDGFAKLANFSADIAHELRTPVTNLVMQTEVALSQSRSSAEYREILYSNLEEFE 305 Query: 299 RLARIVENILFLAQADHSTLAVECSALDLQEELAKITDYFEGIADERGMHFALQAQGI-C 357 R++R++ ++LFLAQ ++ + S + + + + DYFE +A+E + L+ Sbjct: 306 RMSRMISDMLFLAQTENDPHNLHLSDISIAAMIQDLFDYFEALAEEANITLTLEGNAAPV 365 Query: 358 QANLDMWRRAVSNLIINAVRYGEPDSIIRIQAEGDASGSRILVDNRSGNVTPQVMARMFD 417 +A+ +M RA+SNLI NA++Y P S + + D + + V+N +G + + + ++FD Sbjct: 366 KADREMMLRALSNLISNAIQYSAPGSTVIVHLSQDKQVTTVSVENPAGQIAREDLPKLFD 425 Query: 418 RFYRGDRSRSALTESNGLGLAIVKAIMALHRGT--ATVECPQPGWIRFSLRFPSVAAA 473 RF+R D SR GLGLAIVK+I H GT AT E Q I+F + P + A Sbjct: 426 RFFRTDPSRKRKASGAGLGLAIVKSIAEAHGGTVQATSEQAQ---IKFEITLPHIQKA 480 >gi|152982803|ref|YP_001351714.1| two-component system sensor protein [Janthinobacterium sp. Marseille] Length = 463 Score = 190 bits (483), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 104/270 (38%), Positives = 169/270 (62%), Gaps = 4/270 (1%) Query: 183 AILLTSLLGFVLLRRGLQPLEAMSQRAAQITPDRLSTRLEQEGMPAELRRVALSFNAMLD 242 +++ + LG+ + RRGL ++ +S+ A ++P L+ RL MP+EL + LSFN L Sbjct: 174 GVVVVAGLGWWIARRGLLAVDDLSRHAENLSPLNLAERLPTGDMPSELNGLVLSFNGALG 233 Query: 243 RLEAGYDHLAQFSGDLAHEIRTPINVLMGQSQVALGQRRSPEDYEQLLESNVEELQRLAR 302 R+E Y L+ F+ D+AHE+RTP+ L+GQ+QV L + RS E+ ++L+SN+EEL+RL Sbjct: 234 RVEQAYVQLSTFNADVAHELRTPLGNLIGQTQVMLSRERSAEELTEVLQSNLEELERLRT 293 Query: 303 IVENILFLAQADHSTLAVECSALDLQEELAKITDYFEGIADERGMHFALQAQGICQANLD 362 I+ ++LFLAQAD A + E+ K ++ + + ++ G+ +L +G +A++D Sbjct: 294 IINDMLFLAQADRGIRAANLELTSIASEVLKSAEFLDMLIEDAGV--SLVVEGDAEASID 351 Query: 363 --MWRRAVSNLIINAVRYGEPDSIIRIQAEGDASGSRILVDNRSGNVTPQVMARMFDRFY 420 ++ RA++NL+ NA+++ + +S IR+ E I V N+ V P + R+F+RFY Sbjct: 352 KSLFGRAITNLLYNAIQHCDRNSTIRVHIEERDHAVAINVSNQGVPVEPHHLERLFERFY 411 Query: 421 RGDRSRSALTESNGLGLAIVKAIMALHRGT 450 R D SR+ S+GLGLAIVKAI +H GT Sbjct: 412 RVDSSRTDSDNSHGLGLAIVKAIAHMHGGT 441 >gi|152982293|ref|YP_001351978.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 439 Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 140/284 (49%), Gaps = 17/284 (5%) Query: 185 LLTSLLGFVLLRRGL-QPLEAMSQRAAQITPDRLSTRLEQEGMPAELRRVALSFNAMLDR 243 LL S+ G +L RR L Q L + Q I LS R+ E R++ N+MLD+ Sbjct: 156 LLMSIAGALLFRRELGQRLSGIHQIVTHIEAGDLSRRIPLLQQEDEFSRLSRDINSMLDQ 215 Query: 244 LEAGYDHLAQFSGDLAHEIRTPINVLMGQSQVALGQRRSPED----YEQLLESNVEELQR 299 + D + S +AH +RTP+ +++ L R+S + ++ L+ + E++ Sbjct: 216 QQRLMDGVRHISNTIAHNLRTPM------TRILLRLRKSEHEGAQARDEALQFALHEMED 269 Query: 300 LARIVENILFLAQADHSTLAVECSALDLQEELAKITDYFEGIADERGMHFA--LQAQGIC 357 L+ + +L LA+ + T S++ L + +A + + +E +A+E+ + +A+ + Sbjct: 270 LSVMFNKLLNLAEVESGTRRQSFSSISLNDVVADVLELYEPVAEEKSVQLTAVFEAEPVT 329 Query: 358 QANLDMWRRAVSNLIINAVRYGEPDSIIRIQAEGDASGSRILVDNRSGNVTPQVMARMFD 417 + ++ A++NL+ NA++Y ++ + ++ D G+ I+V + + ++R+ Sbjct: 330 NGDRELLASAIANLVDNALKYAGENAAVEVRTSTDVHGAAIIVRDNGSGIPATELSRIGT 389 Query: 418 RFYRGDRSRSALTESNGLGLAIVKAIMALHRGTATVECPQPGWI 461 FYR DRSR GLGLA V AI LH G PG I Sbjct: 390 HFYRLDRSRPGY----GLGLASVLAIARLHGGNLEFSDANPGLI 429 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,051,125 Number of extensions: 41402 Number of successful extensions: 215 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 194 Number of HSP's successfully gapped: 21 Length of query: 481 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 394 Effective length of database: 899,382 Effective search space: 354356508 Effective search space used: 354356508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)