BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3020.p (223 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 306 9e-85 gi|152981318|ref|YP_001352484.1| response regulator of copper se... 280 5e-77 gi|152983086|ref|YP_001353412.1| response regulator of copper se... 263 9e-72 gi|152981360|ref|YP_001351713.1| two-components system response ... 242 1e-65 gi|152983099|ref|YP_001353451.1| heavy metal response regulator ... 218 3e-58 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 306 bits (783), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 146/221 (66%), Positives = 183/221 (82%) Query: 1 MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGTDGLHLALEQDYDLVVLDVMLPGLDGW 60 M IL++ED+ K+G+YLRKGLRE+G+ VD AR G +GL LAL++ Y+LV+LDVMLP LDGW Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60 Query: 61 QVMSALRSKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT 120 Q++ LR RD PVLFLTARD V+DR++GL+LGADDYLVKPFSF EL+ R+RTLLRRG Sbjct: 61 QLLRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGPV 120 Query: 121 REAEVYEIADLQLDHVRHKVTRQGLNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWDM 180 RE+ + EIAD+Q+D ++ +VTR G + LT KEF LLHLL +R+GE LSRS+IASQ+WDM Sbjct: 121 RESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWDM 180 Query: 181 NFDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGYMFSE 221 NFDSDTNVVDVAI+RLRAK+D P +KLI TVR +GY+ E Sbjct: 181 NFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVLEE 221 >gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 227 Score = 280 bits (716), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 137/219 (62%), Positives = 175/219 (79%), Gaps = 2/219 (0%) Query: 1 MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGTDGLHLALEQDYDLVVLDVMLPGLDGW 60 M ILV+ED+ KT DY+R+GLRE+G+ VD+AR G DG H+A+ + YDLV+LDVMLP +DGW Sbjct: 1 MKILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGW 60 Query: 61 QVMSALR-SKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRR-G 118 ++ +LR + +PVLFLTAR VDDR++GL+LGAD YL+KPF+F+EL+ +RTLLRR Sbjct: 61 HIVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRRN 120 Query: 119 VTREAEVYEIADLQLDHVRHKVTRQGLNIALTNKEFMLLHLLIKRQGEALSRSVIASQIW 178 V +++ +IADL LD R K TR G I LTNKEF LL LL +R+GE L RS+IASQIW Sbjct: 121 VPAQSDQLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRSLIASQIW 180 Query: 179 DMNFDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGY 217 DMNFDS+TNV+DVAI+RLRAK+D P+E KLIHTVR +GY Sbjct: 181 DMNFDSNTNVIDVAIRRLRAKMDEPYEPKLIHTVRGMGY 219 >gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 230 Score = 263 bits (671), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 127/223 (56%), Positives = 172/223 (77%), Gaps = 2/223 (0%) Query: 1 MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGTDGLHLALEQDYDLVVLDVMLPGLDGW 60 M +L++ED+ KTG+YL++GL E+G+AVD A G DG HLA+ YDL++LDVMLP +DGW Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVMLPDIDGW 60 Query: 61 QVMSALRSK-RDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGV 119 +++ ALRS +P LFLTARD V DR++GL+LGADDY+VKPF+F+EL+ R+RTLLRRG Sbjct: 61 KILHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRRGN 120 Query: 120 TRE-AEVYEIADLQLDHVRHKVTRQGLNIALTNKEFMLLHLLIKRQGEALSRSVIASQIW 178 + +++DL LD R TR G + LTNKEF+LL L++ +GE L RS+IASQIW Sbjct: 121 PSPLVDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 179 DMNFDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGYMFSE 221 D+NF+SDTNV+DVAI+RLRAK+D ++ KLI T+R VGY+ + Sbjct: 181 DINFNSDTNVIDVAIRRLRAKMDDDYDPKLISTIRGVGYVLED 223 >gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 227 Score = 242 bits (618), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 122/221 (55%), Positives = 158/221 (71%) Query: 1 MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGTDGLHLALEQDYDLVVLDVMLPGLDGW 60 M IL+IED+ KT YL++GL E G VD+A G DG HLAL DYD +VLD+MLPG DG Sbjct: 1 MKILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGDYDAIVLDIMLPGRDGI 60 Query: 61 QVMSALRSKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT 120 +V+ ALR ++ PV+ LTAR VDDRI GLQ GADDYLVKPFSF EL+ R++ L RRG Sbjct: 61 EVLQALRRQKSTPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRRGRP 120 Query: 121 REAEVYEIADLQLDHVRHKVTRQGLNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWDM 180 +E+ IADL +D + + R + LT KEF LL L + +G+ LS++VI +WD+ Sbjct: 121 QESTHIRIADLHIDLIARRAMRGVRRLDLTAKEFALLAALARHRGQVLSKTVIVEMVWDV 180 Query: 181 NFDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGYMFSE 221 NF+S+TNVV+VAIKRLRAK+D P E KL+HT+R +GY+ E Sbjct: 181 NFESNTNVVEVAIKRLRAKLDEPSEVKLLHTIRGMGYLLEE 221 >gi|152983099|ref|YP_001353451.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 232 Score = 218 bits (554), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 112/230 (48%), Positives = 159/230 (69%), Gaps = 9/230 (3%) Query: 1 MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGTDGLHLALEQDYDLVVLDVMLPGLDGW 60 M IL +ED+ K G+ + GL+++G+ VD + G++GL AL YDL+VLDV P L+GW Sbjct: 1 MKILFVEDEIKPGETMHHGLKDAGFIVDCVKAGSNGLTRALRGAYDLIVLDVKKPHLNGW 60 Query: 61 QVMSALRSKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT 120 +++ LR+ D P+LFLTAR+ +D+++ +LG DDY++K FSF EL+ R+R LLRR Sbjct: 61 KLLLELRAAHDAPLLFLTAREAMDNQVSDAKLGVDDYMIKSFSFMELMERVRILLRRECE 120 Query: 121 REAEVYEIADLQLDHVRHKVTRQGLNIALTNKEFMLLHLLIKRQGEALSRSVIASQIW-- 178 +E ++ EI+D+ +D + V R G I LT K+F LLHLL KR GEALSRS+IA+Q+W Sbjct: 121 QEPKIIEISDILIDVSKRCVLRNGRYIDLTRKQFSLLHLLAKRSGEALSRSLIAAQVWGA 180 Query: 179 ----DMN---FDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGYMFSE 221 D N FD DTNVVDVA+ RLRAK+D + ++LI TVR +GY+ + Sbjct: 181 DFDGDTNVVDFDGDTNVVDVAVCRLRAKLDDHYPQQLIRTVRGMGYVLED 230 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.140 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 496,450 Number of extensions: 19465 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 36 Length of query: 223 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 143 Effective length of database: 925,261 Effective search space: 132312323 Effective search space used: 132312323 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)