BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3019.p
         (322 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981294|ref|YP_001355063.1| putative sulfite oxidase subuni...   484   e-138
gi|152981399|ref|YP_001355230.1| molybdopterin binding oxidoredu...    70   2e-13

>gi|152981294|ref|YP_001355063.1| putative sulfite oxidase subunit
           YedY [Janthinobacterium sp. Marseille]
          Length = 325

 Score =  484 bits (1247), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 232/325 (71%), Positives = 272/325 (83%), Gaps = 3/325 (0%)

Query: 1   MLIKIRPDQIEIPTASEITPKDLYLSRRSFMARMAAGSALATGMGALP--QAFAQQGRKL 58
           MLIK  P+ I++P ASEITP+ ++ SRR F+ ++A GS     +  +   +AFA    + 
Sbjct: 1   MLIKRNPNGIDLPFASEITPRQVFESRRDFIRKLALGSIAGGALLEMASREAFAAPAAQK 60

Query: 59  PAKLNN-AYAVMDKQTAYKDATSYNNFYEFGTDKADPAKNAGTLKTSPWTIAIEGEVNKP 117
            A   N AY V+DKQT+YKDAT+YNN+YEFGTDK  PA+ A  LKT PWT++IEGE+ KP
Sbjct: 61  LAAQQNPAYVVLDKQTSYKDATTYNNYYEFGTDKESPARYASALKTRPWTVSIEGEIKKP 120

Query: 118 MTLDLDALTKLAPLEERIYRLRCVEGWSMVIPWIGYSLSALIRKVEPTGNARYVEFVTLA 177
           MTLDLD+L KLAPLEER+YRLRCVEGWSMVIPWIGYSLS LI+KVEP  NA+YVEFVT+A
Sbjct: 121 MTLDLDSLLKLAPLEERVYRLRCVEGWSMVIPWIGYSLSELIKKVEPNSNAKYVEFVTVA 180

Query: 178 DKKQMPGLSDPILNWPYREGLRMDEANHPLTLLTLGMYGEVLPNQNGAPVRIVVPWKYGF 237
           DK+ M GL+  +L+WPY EGLR+DEANHPLTLLTLGMYGEVLPNQNGAPVRIV PWKYGF
Sbjct: 181 DKEAMHGLNRAVLDWPYVEGLRLDEANHPLTLLTLGMYGEVLPNQNGAPVRIVTPWKYGF 240

Query: 238 KSAKSIVKIRFVKDEPKTAWNLYAPQEYGFYSNVNPTVDHPRWSQATERRIGEDGFFAPK 297
           KSAKSIVKIRFVK++P+TAWNL AP+EYGFYSNVNP VDHPRWSQA+ERRIGEDG F  K
Sbjct: 241 KSAKSIVKIRFVKEQPRTAWNLAAPREYGFYSNVNPQVDHPRWSQASERRIGEDGLFTKK 300

Query: 298 RKTLMFNGYNEVASLYTGMDLRKFY 322
           R TLMFNGY++VASLYTGMDL+KF+
Sbjct: 301 RPTLMFNGYSQVASLYTGMDLKKFF 325


>gi|152981399|ref|YP_001355230.1| molybdopterin binding
           oxidoreductase [Janthinobacterium sp. Marseille]
          Length = 258

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 16/152 (10%)

Query: 106 WTIAIEGEVNKPMTLDLDALTKLAPLEERIYRLRCVEGWSMVIPWIGYSLSALIRKVEPT 165
           W + + G +       L  L +L P  E++ R  CVEGWS +  W G   S  +R++   
Sbjct: 112 WRLELSGLIANRAPWSLAQLQRL-PHSEQVTRHICVEGWSAIGKWGGVPFSYFLRQIGAD 170

Query: 166 GNARYVEFVTLADKKQMPGLSDPILNWPYREGLRMDEANHPLTLLTLGMYGEVLPNQNGA 225
            +A+YV F    D               Y   + M  A HP TL+ L   G+ LP + G 
Sbjct: 171 LSAKYVGFKCADD---------------YYTSIDMPTALHPQTLMALTYDGKTLPPEYGY 215

Query: 226 PVRIVVPWKYGFKSAKSIVKIRFVKDEPKTAW 257
           P+++ +P K G+K+ K I  I      P   W
Sbjct: 216 PMKLRMPTKLGYKNPKHIQAIYVTNTYPGGYW 247


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 793,819
Number of extensions: 34047
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 239
Effective length of database: 914,170
Effective search space: 218486630
Effective search space used: 218486630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)