BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3018.p
         (223 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981541|ref|YP_001355062.1| hypothetical protein mma_3372 [...   233   1e-62

>gi|152981541|ref|YP_001355062.1| hypothetical protein mma_3372
           [Janthinobacterium sp. Marseille]
          Length = 213

 Score =  233 bits (593), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/205 (59%), Positives = 152/205 (74%)

Query: 12  NLKPRSVTVLWWCFLALAFVPLVRLVVLGFTGGLGANPLEFITHSTGDWTLYLFCITLAV 71
           N  PR +T++      LA +P  RL V   T  LGANP+EFIT +TGDWTLY  C+TLA+
Sbjct: 4   NPTPRQLTLVKCVLFLLALLPFARLAVFTVTDQLGANPIEFITRNTGDWTLYFLCMTLAI 63

Query: 72  TPLRKLTGLNWLVRMRRMVGLMAFFYLCLHFTTFVWFDHFFDLGEIWKDILKRPFITVGV 131
           TPLR+ +  NWL+++RRM+GL AFFY  LHF TF WFDHFFD+ E+W D+LKRPFITVG 
Sbjct: 64  TPLRRFSKWNWLLKLRRMLGLFAFFYASLHFMTFFWFDHFFDVSEMWADVLKRPFITVGF 123

Query: 132 LALVLSIPLAITSTNGMVRRLGGKRWQVLHRLVYVIVPLGVLHYWWDKAGKNLIAQPLLF 191
            A VL IPLA+TSTNGMV+RLGGKRWQ LHRL+Y I  LG+LHYWW KAGK+   QP++F
Sbjct: 124 TAFVLLIPLAVTSTNGMVKRLGGKRWQWLHRLIYAIALLGILHYWWMKAGKHDFEQPIIF 183

Query: 192 AVLVGLMLALRLLWRKGRAHAAPVV 216
             +VG++L LR++W   +    PVV
Sbjct: 184 GSIVGVLLLLRVVWWWQKRAQTPVV 208


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.333    0.146    0.499 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 482,085
Number of extensions: 20457
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 143
Effective length of database: 925,261
Effective search space: 132312323
Effective search space used: 132312323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 128 (53.9 bits)