BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3017.p
         (229 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981214|ref|YP_001354529.1| peptide methionine sulfoxide re...   170   8e-44
gi|152983052|ref|YP_001352637.1| methionine sulfoxide reductase ...   118   4e-28

>gi|152981214|ref|YP_001354529.1| peptide methionine sulfoxide
           reductase [Janthinobacterium sp. Marseille]
          Length = 179

 Score =  170 bits (430), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 112/175 (64%), Gaps = 3/175 (1%)

Query: 50  LAGGCFWGVQGVFQHTQGVLQAVSGYAGGKADTASYSQVSAGTTGHAEAVQVTYDPRKIS 109
           L GGCFW  + VFQ  +G+    SGY GG  +   Y Q+  GTTGHAE V++TYDP  +S
Sbjct: 8   LGGGCFWCTEAVFQQLKGIKAVESGYTGGHVENPVYEQICEGTTGHAEVVRLTYDPEIVS 67

Query: 110 YGQILQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTASAQQQQATLAYIAQLNAAKVFAAP 169
           + +IL+I+F++ HDPT LNRQG D GTQYRS I+  S +QQ      I+++  A V+ AP
Sbjct: 68  FREILEIFFTI-HDPTTLNRQGNDVGTQYRSVIYYHSPEQQDTAKHVISEM--ANVWDAP 124

Query: 170 IVTTVAPLQAFYRAEDYHQDYATLHPNQPYIAYNDLPKISNLQKMYPAIYRADPV 224
           IVT ++P + +Y+AE YHQ+Y  ++P Q Y A+   PK+S  +K +      D +
Sbjct: 125 IVTELSPAETYYKAESYHQNYFRMNPMQGYCAFIVAPKVSKFRKTFSDKISGDMI 179


>gi|152983052|ref|YP_001352637.1| methionine sulfoxide reductase A
           [Janthinobacterium sp. Marseille]
          Length = 168

 Score =  118 bits (295), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 85/142 (59%), Gaps = 5/142 (3%)

Query: 49  VLAGGCFWGVQGVFQHTQGVLQAVSGYAGGKADTASYSQVSAGTTGHAEAVQVTYDPRKI 108
           VLAGGCFWG+Q + +   GV+    GY GG    A+Y   + GT  HAE + + +D    
Sbjct: 6   VLAGGCFWGMQDLIRKLPGVVSTRVGYTGGNTPNATYR--NHGT--HAEGIDIVFDTTLT 61

Query: 109 SYGQILQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTASAQQQQATLAYIAQLNAAKVFAA 168
           SY  IL+ +F + HDPT  +RQG D GT YRSAIF  + +Q++     IA +NA+ ++  
Sbjct: 62  SYQIILEYFFQI-HDPTTWDRQGNDVGTSYRSAIFYTTDEQRKIAEKTIADVNASGLWPG 120

Query: 169 PIVTTVAPLQAFYRAEDYHQDY 190
            +VT V P+  F+ AE  HQDY
Sbjct: 121 KVVTEVEPVGDFWDAEPEHQDY 142


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 471,129
Number of extensions: 16279
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 149
Effective length of database: 925,261
Effective search space: 137863889
Effective search space used: 137863889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)