BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3014.p (283 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinoba... 150 7e-38 gi|152981134|ref|YP_001352907.1| signal transduction protein [Ja... 149 1e-37 gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protei... 147 5e-37 gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [... 147 6e-37 gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 144 6e-36 >gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 914 Score = 150 bits (380), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 130/236 (55%), Gaps = 2/236 (0%) Query: 6 QFRRAIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCLDA 65 Q RAIQ FIV YQP + G VG EALVRW + L++PDHF+ A+ + Sbjct: 660 QLARAIQEDHFIVYYQPRVEAQTGRMVGMEALVRWAHPERGLIAPDHFIPLAESTGMILP 719 Query: 66 ITDLVLEQIIDDMA-LSLRAHPRLHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQLWL 124 + LV+E++ +A + + V+VNV A + G + + +A+ L+ +DP + + Sbjct: 720 LGRLVMEKVFCQIAAWQFQKLAVVPVSVNVSARQFDEGNVSEFIASCLNKYAVDPRFIEI 779 Query: 125 EVTESSSMETLP-CRETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVIS 183 E+TES+ M R ++ G I +DDFGTGYS L L++ DVLK+DR+F Sbjct: 780 ELTESAMMGNFEQVRGEISSISALGIQIHVDDFGTGYSSLSLLYKFNMDVLKVDRAFTSQ 839 Query: 184 ISDDAPPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPM 239 I + I+ MAK L +++VAEGVET+ Q L+Q G D QG+ S+P+ Sbjct: 840 ICNGKGGEIFFSSIVSMAKVLKMRVVAEGVETIEQLRVLQQLGCDEIQGYLVSKPI 895 >gi|152981134|ref|YP_001352907.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 898 Score = 149 bits (377), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 135/244 (55%), Gaps = 2/244 (0%) Query: 4 KAQFRRAIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCL 63 + + ++AI+ QF++ YQP + G +G EAL+RWQ L+ P+ F+ A+ + Sbjct: 645 EQELQQAIKEDQFLIYYQPRVQTQTGKLLGIEALIRWQHPTRGLVLPNDFIGLAEESGLI 704 Query: 64 DAITDLVLEQIIDDMALSLRAHPR-LHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQL 122 + I +LV++++ +A L+ + V+VNV H N G++ K +AA L GI + L Sbjct: 705 NPIGELVVDKVCAQLASWLKQGVEAVPVSVNVSPHQFNEGKVKKSIAASLAKHGIPASLL 764 Query: 123 WLEVTESSSMETL-PCRETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFV 181 +E+TES+ M + + LT G + +DDFGTGYS L L L D+LK+D++F Sbjct: 765 EIELTESAMMRNIGDIFDELTAINAMGIKVHVDDFGTGYSSLSLLQRLDMDILKIDQAFT 824 Query: 182 ISISDDAPPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPMLA 241 + I+ MAK LG+++VAEGVET+ Q H L+ D QG+Y + P+ A Sbjct: 825 SQLGRGKDGEIFFTAIVSMAKALGMRVVAEGVETLEQLHILQTLSCDEVQGYYVAWPLPA 884 Query: 242 VEFA 245 A Sbjct: 885 DNIA 888 >gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 641 Score = 147 bits (372), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 134/241 (55%), Gaps = 8/241 (3%) Query: 6 QFRRAIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCLDA 65 +F+RAI+ +F + YQP + L + VG EALVRWQ + L+ P+ F+ A+ + + Sbjct: 389 RFKRAIRDDEFCLHYQPRVELQEFGLVGLEALVRWQHPEHGLIFPNDFITLAEENDLIVL 448 Query: 66 ITDLVLE----QIIDDMALSLRAHPRLHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQ 121 + V++ QI D A L P + VA+NV + +L+ + L I+P Sbjct: 449 LGRWVIDAACRQIADWRAAGL---PLVPVAINVSPKQLKDSALLETVMETLARYQIEPGL 505 Query: 122 LWLEVTESSSMETL-PCRETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSF 180 L +E+TE +E L Q R G IALDD+GTG+S L+ L +LP +K+DRSF Sbjct: 506 LEIEITEGCFIEDFDTANRVLEQLRANGLRIALDDYGTGFSGLKNLKKLPIYAIKIDRSF 565 Query: 181 VISISDDAPPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPML 240 V I +D ++ I +A LGL++VAEGVE+ Q +L+ AG D QG+Y+ RP+ Sbjct: 566 VRDIRNDNSDAVIVASTISLAHNLGLQVVAEGVESKEQLVHLKTAGCDQVQGFYFKRPVA 625 Query: 241 A 241 A Sbjct: 626 A 626 >gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille] Length = 876 Score = 147 bits (372), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 133/241 (55%), Gaps = 4/241 (1%) Query: 7 FRRAIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCLDAI 66 R A++R + V YQP + LADG+ G E L+RW + L+SP+ F+ A+ + I Sbjct: 620 LRFALERNELSVAYQPKVLLADGSVQGFELLLRWNSPEYGLISPNEFIPIAETSGMVVPI 679 Query: 67 TDLVLEQIIDDMALSLRAHPR---LHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQLW 123 +EQ +A + +P L +A+NV + + L+ +G+ P + Sbjct: 680 GMWAMEQACKQLAAWQQQYPEMGSLTMAINVSMRQLLQTSFFSQVRDILNSSGVIPQMVE 739 Query: 124 LEVTESSSMET-LPCRETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVI 182 LE+TE+S+M L E L+ ++ G +ALDDFGTGYS L YL +LP D+LK+D++FV Sbjct: 740 LELTETSAMANPLQTMENLSMLKKLGVRLALDDFGTGYSSLAYLQKLPIDILKIDKAFVR 799 Query: 183 SISDDAPPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPMLAV 242 I + ++ ++ +A+ L L+ AEGVET Q L++ G + QG+ +S P+ A Sbjct: 800 GIGSNQSDTEIIRLMMALAQTLNLQTTAEGVETFEQIQELKKMGCNLGQGFLFSAPLTAQ 859 Query: 243 E 243 E Sbjct: 860 E 860 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 144 bits (363), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 130/241 (53%), Gaps = 2/241 (0%) Query: 6 QFRRAIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCLDA 65 + R+AI + F++ YQP ++LA +GAEALVRW ++SP F+ A+ + Sbjct: 453 RLRQAITNEDFVLHYQPKVSLASHQIIGAEALVRWNSAHSGMVSPASFIPLAEETGLIIP 512 Query: 66 ITDLVLEQII-DDMALSLRAHPRLHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQLWL 124 + + VL + A +P + ++VN+ + G I++V+ L TG++ L L Sbjct: 513 LGEWVLRTACRQNRAWQDAGYPPIPISVNLSPRQLARGDIVEVVERILTETGLEAQHLEL 572 Query: 125 EVTES-SSMETLPCRETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVIS 183 E+TES + + LTQ R G I+LDDFGTGYS L YL P D LK+D+SFV Sbjct: 573 EITESVMTTDVEKSFALLTQLRSLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSFVRD 632 Query: 184 ISDDAPPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPMLAVE 243 I+ D ++ II + + L L ++AEG+ET Q +L G D QG+ S+P+ Sbjct: 633 IATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQFQFLLANGCDEGQGYLMSKPVPNKN 692 Query: 244 F 244 F Sbjct: 693 F 693 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 634,109 Number of extensions: 25464 Number of successful extensions: 111 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 15 Length of query: 283 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 201 Effective length of database: 917,867 Effective search space: 184491267 Effective search space used: 184491267 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)