BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3013.p (702 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982247|ref|YP_001353080.1| ABC transporter, ATP-binding/pe... 194 2e-50 gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport sy... 139 6e-34 gi|152982606|ref|YP_001354944.1| ABC-type transport system, ATPa... 134 3e-32 gi|152980335|ref|YP_001353519.1| ABC transporter membrane-spanni... 129 6e-31 gi|152981278|ref|YP_001351967.1| ABC-type transport system invol... 125 8e-30 >gi|152982247|ref|YP_001353080.1| ABC transporter, ATP-binding/permease fusion protein, type I secretion pathway [Janthinobacterium sp. Marseille] Length = 585 Score = 194 bits (492), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 163/559 (29%), Positives = 267/559 (47%), Gaps = 45/559 (8%) Query: 144 ILEVVIASVVMSIIALGASIFSMQVYDRVIPTHGVATLIVLAIGVSLAILFELGMKFARS 203 ++E+V+A ++++ L ++S VYD+VI H TL L +G+ L + E ++ R+ Sbjct: 52 MVEIVVAGFLINVFGLLLPVYSRLVYDKVIGNHIPDTLWALTLGMLLFLALEFVLRVIRT 111 Query: 204 HIMDNVVSGLDAKLSQALFERLLSVRVDQLPGSVGSLAGQLRGYEQIRSFYTSQTLFTLV 263 ++ + D QA+ ++LL+ RV VG + + R R +S + ++ Sbjct: 112 FYIEQLAGKFDIDFDQAVVKKLLAARVSW---PVGVVLAKYRDITSARDLLSSNYMLVII 168 Query: 264 DLPLGLLFVLVIAFIASP--WMAMVPTLFGLAAIAIGYLSNRKVVRLADKSAAASNLKTG 321 D P LL++L I I P W+ +V G + L A + KT Sbjct: 169 DFPFLLLYLLAIGLIGGPIVWVVLVG---GTLLVGAQLLCKIPANDYASTAMTIGATKTN 225 Query: 322 LLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRSDMAMRAIGDHAGY-IAAMLQQLSYS 380 L V G+ET+K+ + + L + AE A G+ I++ L Sbjct: 226 KLAGLVYGIETLKTSALQKRVLELFAK-DAEDAGITQAKSRFWSSVGFTISSSGYTLMTV 284 Query: 381 TTVIVGSFLVINGQITMGALIACSILGGR---ILAPVAMIPGLM--VQRAHTKATLAGLE 435 T++VG ++V +T+GALIA S+L GR +L+ VAM+ G + ++A T +E Sbjct: 285 ATLVVGVYMVEANALTVGALIASSMLVGRAASMLSSVAMVLGRIDAFKQARTSFEELFIE 344 Query: 436 KIYALQTDQGSDRQLTPDSLRGEFRVEEAKFTYAGSLLNAMTIDQLTIKAGERVAILGPI 495 A T++ DRQ + G+ +V F+ + I GE++ ++G Sbjct: 345 APNAQVTNE-VDRQ----QIDGKIQVANLSFSIKPDEPAMLKQISFVINPGEKIGLVGRS 399 Query: 496 GAGKSTILRLLSGLYRPQQGRILLDGLDLSNINRLTLNQHIGYLQQDHRLFVGTLRENLL 555 G+GKST+LR L+G++ P G++L+DG+ ++ + + I Y QD LF GTL N+ Sbjct: 400 GSGKSTLLRCLAGVHAPDTGQVLMDGIAVAAYPQEVRMRSIAYKPQDPFLFDGTLASNIF 459 Query: 556 IGLPDPGDEVLRQVMERTGLLRLVSAHPKGLDLPIQEGGR-----------GLSGGQRQL 604 + D + + +T L H +D + GG+ LSGGQRQ+ Sbjct: 460 V------DNAISTSIYQTAL------HVSCMD-ELLAGGQLRLDQLLVAPGNLSGGQRQM 506 Query: 605 VAFTRLLLCRPDIFLLDEPTASMDEDLERHCLNVLNEEINGGRTLVVVTHKPAFLPMVER 664 VA R + C P++ LLDEPT +D+ E + L RTLVV TH P L ++R Sbjct: 507 VALARAIACTPNVLLLDEPTTGIDQGTENKIIERL-VAFAATRTLVVATHSPVLLKQMDR 565 Query: 665 VIVVVGNRIVLDGPRDAVL 683 +IV+ +IV DGPR +L Sbjct: 566 IIVIHDGKIVADGPRAQIL 584 >gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 705 Score = 139 bits (350), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 127/501 (25%), Positives = 235/501 (46%), Gaps = 17/501 (3%) Query: 193 LFELGMKFARSHIMDNVVSGLDAKLSQALFERLLSVRVDQLPGS-VGSLAGQLRGYEQIR 251 LF G+ +AR++I+ V + A L +E LL + ++ G G L ++ G E R Sbjct: 185 LFAWGLGWARTYILALVSERIGADLRTTTYEHLLRLSLEYFGGKRTGDLMTRI-GSETDR 243 Query: 252 -SFYTSQTLFTLVDLPLGLLFVLVIAFIASPWMAMVPTLFGLAAIA-IGYLSNRKVVRLA 309 + S L L ++ I +PW+A+V TL L IA + ++ K+ Sbjct: 244 ICVFLSLHLLDFFTDVLMIMMTAAILISINPWLALV-TLLPLPFIAWMIHVVRDKLRNGF 302 Query: 310 DKSAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRSDMAMRAIGDHAGY 369 +K + T +L +T+ G+ +K+ + + +R+ + + ++ + + + Sbjct: 303 EKVDRIWSQVTNVLADTIPGIRVVKAFAQEKREAARFREANNHNLVVNDRVNKVWSLFSP 362 Query: 370 IAAMLQQLSYSTTVIVGSFLVINGQITMGALIACSILGGRILAPVAMIPGLMVQRAHTKA 429 L ++ +G + V G IT+G L A R + + ++ + T+ Sbjct: 363 TVTFLTEIGLLVVWALGIWQVSQGMITVGVLTAFLAYISRFYTRLDSMSRIV---SVTQK 419 Query: 430 TLAGLEKIYALQTDQGSDRQLTP----DSLRGEFRVEEAKFTYAG-SLLNAMTIDQLTIK 484 G ++I+ + S + T D ++G+ +++ F Y +++ + LTI Sbjct: 420 AATGAKRIFDILDHVSSVPEATNPVHLDKVQGKITIKDIGFRYGNRAVIRGL---DLTIN 476 Query: 485 AGERVAILGPIGAGKSTILRLLSGLYRPQQGRILLDGLDLSNINRLTLNQHIGYLQQDHR 544 GE + ++G G+GKST++ L+ Y G I++DG+D+ +I ++IG + Q+ Sbjct: 477 PGEMIGLVGHSGSGKSTLVNLICRFYDVSAGAIMVDGVDVRSIPIPEYRRNIGLVLQEPF 536 Query: 545 LFVGTLRENLLIGLPDPGDEVLRQVMERTGLLRLVSAHPKGLDLPIQEGGRGLSGGQRQL 604 LF GT+ +N+ G PD E + + P G D + E G+ LSGG+RQ Sbjct: 537 LFFGTIADNIAYGKPDASREDIIAAARAAHAHEFILRLPHGYDSMVGERGQTLSGGERQR 596 Query: 605 VAFTRLLLCRPDIFLLDEPTASMDEDLERHCLNVLNEEINGGRTLVVVTHKPAFLPMVER 664 ++ R LL P I +LDE T+S+D ER L+ + GRT + + H+ + L +R Sbjct: 597 ISIARALLIDPHILILDEATSSVDTTTEREIQKALDNLVR-GRTTIAIAHRLSTLRRADR 655 Query: 665 VIVVVGNRIVLDGPRDAVLAR 685 ++V+ +IV G D +L R Sbjct: 656 IVVMDRGQIVEVGSHDELLQR 676 >gi|152982606|ref|YP_001354944.1| ABC-type transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 621 Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 136/244 (55%), Gaps = 12/244 (4%) Query: 452 PDSL-----RGEFRVEEAKFTYAGSLLNAMTIDQLTIKAGERVAILGPIGAGKSTILRLL 506 PD+L +GE E F Y G+ +D LTI+ GE+V ++G GAGKSTI+ LL Sbjct: 348 PDALPLQVDKGELVFESVGFAYGGTRPVIEQLD-LTIRPGEKVGLVGRSGAGKSTIVNLL 406 Query: 507 SGLYRPQQGRILLDGLDLSNINRLTLNQHIGYLQQDHRLFVGTLRENLLIGLPDPGDEVL 566 Y +QGRIL+DG D++++ + +L +G + QD L ++R+N+L G PD DE + Sbjct: 407 LRFYDIEQGRILIDGQDIAHVTQTSLRAQVGMVTQDTSLLHRSVRDNILYGRPDASDEQM 466 Query: 567 RQVMERTG----LLRLVSAHPK-GLDLPIQEGGRGLSGGQRQLVAFTRLLLCRPDIFLLD 621 +R +L L A + G D + E G LSGGQRQ +A R++L I LLD Sbjct: 467 IAAAKRAEAHEFILTLSDAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLD 526 Query: 622 EPTASMDEDLERHCLNVLNEEINGGRTLVVVTHKPAFLPMVERVIVVVGNRIVLDGPRDA 681 E T+++D + E L + + G+T+V + H+ + + ++R+IV+ IV +G Sbjct: 527 EATSALDSEAEAAIQTSLYQLME-GKTVVAIAHRLSTIAAMDRLIVLDKGSIVEEGTHRE 585 Query: 682 VLAR 685 +L R Sbjct: 586 LLER 589 >gi|152980335|ref|YP_001353519.1| ABC transporter membrane-spanning ATP-binding protein [Janthinobacterium sp. Marseille] Length = 610 Score = 129 bits (324), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 93/373 (24%), Positives = 179/373 (47%), Gaps = 10/373 (2%) Query: 316 SNLKTGLLVETVEGVETIKSGSGGWKFLSRW----IDVSAESIRSDMAMRAIGDHAGYIA 371 +N +G + E++ +E IKS + + R I++ A ++ +R + G Sbjct: 195 TNRNSGFIAESLRNIELIKSLGLTFAEIRRLQAQTIELFALEMKKVKRIRLLSFLQGTTL 254 Query: 372 AMLQQLSYSTTVIVGSFLVINGQITMGALIACSILGGRILAPVAMIPGLMVQRAHTKATL 431 +L+ + +L+ ++ G LIA + ILAP+ + +++ +A+L Sbjct: 255 VVLKH----AILFALLWLIFRDVLSTGELIAMQFISVAILAPLQELGNIIIAYREAEASL 310 Query: 432 AGLEKIYALQTDQGSDRQLTPDSLRGEFRVEEAKFTYAGSLLNAMTIDQLTIKAGERVAI 491 + + ++GS + S+R + R E+ F++ + A+ + G+ +A Sbjct: 311 LNFDILMKKPVERGSKSAIDIGSIR-DVRFEDVSFSHKHASEPALQHVSFSAGLGDTIAF 369 Query: 492 LGPIGAGKSTILRLLSGLYRPQQGRILLDGLDLSNINRLTLNQHIGYLQQDHRLFVGTLR 551 +GP G+GKST+++LL GLY P G + + + ++ + IG++ Q+ LF GT+R Sbjct: 370 VGPSGSGKSTLVKLLVGLYTPASGAVYYNDVSTRDLRYNRARRQIGFVTQETHLFAGTIR 429 Query: 552 ENLLIGLPDPGDEVLRQVMERTGLLRLVSAHPKGLDLPIQEGGRGLSGGQRQLVAFTRLL 611 ENL PD DE + ME+ L+ P+GLD I E G LSGG++Q ++ R L Sbjct: 430 ENLQFVKPDATDEEIIAAMEQASCAYLLEQSPEGLDTMIGEMGVKLSGGEKQRLSIARAL 489 Query: 612 LCRPDIFLLDEPTASMDEDLERHCLNVLNE-EINGGRTLVVVTHKPAFLPMVERVIVVVG 670 + +P + + DE T+++D E + + + +++ H+ + + + V+ Sbjct: 490 IRQPRLLIFDEATSALDSLTEEQITDTVRMISARSTQITILIAHRLSTIMHANTIFVLEK 549 Query: 671 NRIVLDGPRDAVL 683 IV G A+L Sbjct: 550 GHIVESGSHLALL 562 >gi|152981278|ref|YP_001351967.1| ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 630 Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 88/300 (29%), Positives = 152/300 (50%), Gaps = 11/300 (3%) Query: 390 VINGQITMGALIACSILGGRILAPVAMIPGLMVQRAHTKATLAGLEKIYALQTDQGSDRQ 449 VI+G +T+G L+ + ++ P+ + G++ + K +LA +E++++L DQ + Sbjct: 290 VISGTMTLGDLVLVNAFMIQLYIPLNFL-GVIYR--EIKQSLADMERLFSL-LDQNREIA 345 Query: 450 LTPDSLR-----GEFRVEEAKFTYAGSLLNAMTIDQLTIKAGERVAILGPIGAGKSTILR 504 PD+ E R F+Y + +D TI AG A++G G+GKST+ R Sbjct: 346 DKPDTQALVTDGAEVRFSHVDFSYEANRQILFDVD-FTIAAGTTTAVVGHSGSGKSTLSR 404 Query: 505 LLSGLYRPQQGRILLDGLDLSNINRLTLNQHIGYLQQDHRLFVGTLRENLLIGLPDPGDE 564 LL Y QG IL+DG D+ ++ + +L Q IG + QD LF T+ N+ G P Sbjct: 405 LLFRFYDVNQGAILIDGQDVRDVTQTSLRQAIGIVPQDTVLFNDTIAYNIAYGKPGASHA 464 Query: 565 VLRQVMERTGLLRLVSAHPKGLDLPIQEGGRGLSGGQRQLVAFTRLLLCRPDIFLLDEPT 624 + + + + + P G + + E G LSGG++Q VA R LL P I + DE T Sbjct: 465 DIVAAAQSAYIHEFIESLPDGYNTMVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEAT 524 Query: 625 ASMDEDLERHCLNVLNEEINGGRTLVVVTHKPAFLPMVERVIVVVGNRIVLDGPRDAVLA 684 +++D E+ + +EI RT +++ H+ + + +++V+ RI+ G +LA Sbjct: 525 SALDSKSEQ-AIQAQLKEIAQNRTTLIIAHRLSTIADAAQILVLDKGRIIERGTHMQLLA 583 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.139 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,530,254 Number of extensions: 63472 Number of successful extensions: 383 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 335 Number of HSP's successfully gapped: 57 Length of query: 702 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 612 Effective length of database: 888,291 Effective search space: 543634092 Effective search space used: 543634092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)