BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3011.p
         (541 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982381|ref|YP_001353079.1| hypothetical protein mma_1389 [...    73   5e-14

>gi|152982381|ref|YP_001353079.1| hypothetical protein mma_1389
           [Janthinobacterium sp. Marseille]
          Length = 576

 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 4/105 (3%)

Query: 149 NIQRRTTLPQYIANTLIGLGLFGTFLGLIVTLKEVAALIGLFGVAGTEGSDMMAQF---F 205
           +++ R   PQY+   +I LGL GTF+GL+ TL   A LI  FG A ++GSDM A F    
Sbjct: 150 HLEARMEFPQYLTGFMIALGLLGTFIGLLETLVSTADLINGFGQA-SQGSDMDASFAHLV 208

Query: 206 QKMSGPLAGMGDAFVASLLGLGGSIVNNVQLLATKKLQRVLCVRA 250
             ++ PLA MG AF AS+ GL GS+   + L+  +   + L V A
Sbjct: 209 ADLNKPLASMGTAFSASMFGLIGSLTLGLTLVCLRGAGKRLVVAA 253


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,106,524
Number of extensions: 40495
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 453
Effective length of database: 895,685
Effective search space: 405745305
Effective search space used: 405745305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)