BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3000.p (459 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981206|ref|YP_001352388.1| GntR family transcriptional reg... 317 1e-87 gi|152980987|ref|YP_001354760.1| GntR family transcriptional reg... 115 4e-27 gi|152983061|ref|YP_001352668.1| GntR family transcriptional reg... 112 3e-26 gi|152980958|ref|YP_001351821.1| GntR family transcriptional reg... 111 7e-26 gi|152980994|ref|YP_001352392.1| transcriptional regulator [Jant... 106 3e-24 >gi|152981206|ref|YP_001352388.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 488 Score = 317 bits (812), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 177/452 (39%), Positives = 262/452 (57%), Gaps = 15/452 (3%) Query: 4 TLTQTLVQSIRRQIADGAYPPGSRLPSIRVLASQHGCAKNTIVNVFEELTAQGVVEPRRG 63 +L + +VQ I +I D G+R+PSIR + QH ++ T+V ++ L A G++E RRG Sbjct: 29 SLIEQIVQLITSRIDDKILRTGARMPSIRQFSDQHQVSRFTVVEAYDRLVAGGLLESRRG 88 Query: 64 AGFFVCATPP--RPKEEEERSLSR-AMDVVWLMREQLKHDPGHLRLGDGFPPVEWLHDVR 120 +GF+V P P+ + +S ++ +DVVWL+R + P G G P EWL Sbjct: 89 SGFYVRDRAPMLTPRAQGLQSAAQQPVDVVWLVRNMFRQLPPQKMPGVGLLPNEWLDGDL 148 Query: 121 LDKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVHKLAQHGIEAATSQLVLTHGANQALDI 180 + + V R L YG G+LPLRQ L K+A+ I A Q V T G Q LD+ Sbjct: 149 VANALRAVSRQNPNLLLQYGIPQGFLPLRQQLQLKMAELEISATPDQFVTTAGVTQGLDL 208 Query: 181 VIRHFVRPCDRVLVDEPGYYMLYGKLKLSGARIVGIPRQADGPDIEALERELKASGKPPL 240 V RH+++P D + VD+PG+++++G GA++VGIPR DGPDI L L +P L Sbjct: 209 VARHYIQPGDTIFVDDPGWFLMFGSFAALGAKVVGIPRLPDGPDIAQLT-ALAELHRPKL 267 Query: 241 FFTQSLAHNPTASDTSPHKAHKILQLADRYDALIVENDAFADFKPA----TAPRIATLDQ 296 F S+ HNPT++ S KA ++L++A++YD +IVE+D + D P A RIA LDQ Sbjct: 268 FIINSILHNPTSTSLSAAKAFQVLKIAEQYDFMIVEDDIYCDMHPGAAVQAATRIAALDQ 327 Query: 297 LRRTLYLGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHVSSSEYCERTLDVILSDGH 356 L R +YLG FSK+++A LRVGFIA ++A LAD KML ++++E ER + ILS+GH Sbjct: 328 LNRVIYLGGFSKTLAANLRVGFIATSPEIARQLADRKMLTALTTTEITERVVYRILSEGH 387 Query: 357 FSRHTARLRERLAQATDAACHQLQQLGAELFCAPQQSMYLWARFPGFADAKQLAQALMAH 416 + +HT RLR +L D Q++++G ++ M+ W DA LA+ M Sbjct: 388 YRKHTDRLRTKLNAVRDKTIRQMERIGIKIHFHTPAGMFAWTDVG--CDATILAEKAMEQ 445 Query: 417 HVVLAPGSIFHVETEQKVPWS--RFNVGLLAD 446 +LAPGS+F + ++P + RFNV +AD Sbjct: 446 GYLLAPGSLF---SPNQLPSTNMRFNVAAMAD 474 >gi|152980987|ref|YP_001354760.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 473 Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 120/478 (25%), Positives = 208/478 (43%), Gaps = 43/478 (8%) Query: 5 LTQTLVQSIRRQIADGAYPPGSRLPSIRVLASQHGCAKNTIVNVFEELTAQGVVEPRRGA 64 L +TL + + I DG G RLPS+R ++ + +T+ + L A+G++ R + Sbjct: 3 LYETLAAELAQSIQDGVLRIGDRLPSVRQASTSRAVSPSTVFQAYYLLEARGLIRARERS 62 Query: 65 GFFVCAT----PPRPKEEEE-RSLSRAMDVVWLMREQLKHDPGHLR----LGDGFPPVEW 115 G++V PP P++ + S +D+ + E L + +R G FP Sbjct: 63 GYYVAGAAQKLPPEPEQASQPNEASSPVDISERVFEVL--ESAKMRELVPFGSAFPSPLL 120 Query: 116 LHDVRLDKFHQKVVRTGMGALFGYGSRFGYLP----LRQHLVHKLAQHGIEAATSQLVLT 171 RL + + + + L + + P LR+ + + G+ T ++V+T Sbjct: 121 FPMARL----ARAMASSVQQLDPWSAVDDLTPGNPQLRRQIALRYLADGLHIHTDEIVIT 176 Query: 172 HGANQALDIVIRHFVRPCDRVLVDEPGYYMLYGKLKLSGARIVGIPRQA-DGPDIEALER 230 +GA AL++ + RP D VLV+ P +Y L+ +G + +P +G D+ AL R Sbjct: 177 NGALDALNLCLAAVTRPGDAVLVESPTFYAALQALERNGLHAIEVPTHPREGIDLAALAR 236 Query: 231 ELKASGKPPLFFTQSLAHNPTASDTSPHKAHKILQLADRYDALIVENDA-----FADFKP 285 ++ +P + + NP S K ++ L +++ ++E+D F D +P Sbjct: 237 AIERH-QPKACWLMTTFQNPLGSLMPDEKKRDLVTLLAQHEIPLIEDDVYGELYFGDKRP 295 Query: 286 ATAPRIATLDQLRRTLYLGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHVSSSEYCE 345 A D ++ SFSK ++ RVG+ A R +A K+ +++S + Sbjct: 296 MPA---KAFDSKGLVMHCSSFSKCLAPGYRVGWAAPGR-FTRAVARRKLTTTLAASAPAQ 351 Query: 346 RTLDVILSDGHFSRHTARLRERLA-QATDAACHQLQQLGAELFCA------PQQSMYLWA 398 L L G + +H +LR L+ Q T Q + A F A P+ +LW Sbjct: 352 AALATYLEKGGYDKHLRQLRHTLSVQQT-----QFMEAIARSFPAGTQATRPKGGYFLWL 406 Query: 399 RFPGFADAKQLAQALMAHHVVLAPGSIFHVETEQKVPWSRFNVGLLADTRFAAAMAEL 456 P +A +L + +A + LAPG IF R N G + D R AA+A L Sbjct: 407 ELPAKVNALELHRQALAQGISLAPGPIFSAH-HGFTNCIRLNYGHVWDARSEAALASL 463 >gi|152983061|ref|YP_001352668.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 469 Score = 112 bits (281), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 105/430 (24%), Positives = 199/430 (46%), Gaps = 25/430 (5%) Query: 4 TLTQTLVQSIRRQIADGAYPPGSRLPSIRVLASQHGCAKNTIVNVFEELTAQGVVEPRRG 63 +L++ + SI R I G PG+RLPS + LA+Q G A+ T+ +E L+ ++E Sbjct: 16 SLSEQICVSICRAIESGLLAPGTRLPSWQGLAAQLGVARGTVQAAYERLSDSQMIETFGA 75 Query: 64 AGFFVC----ATPPRPKEEEERSLSRAMDVVWLMREQLKHDPGHLRLGDGFPPVEWLHDV 119 G V T +P+ + + + +++ P +LG P +E D Sbjct: 76 KGTRVAPRLHTTAGKPEAPQPGAFMKTY-------QEMMAGPAIFQLG--IPAMEGFPDK 126 Query: 120 RLDKFHQ-KVVRTGMGALFGYGSRFGYLPLRQHLVHKLA-QHGIEAATSQLVLTHGANQA 177 + +++TG + Y G + LR+ + L+ + Q+ +T G + Sbjct: 127 LFARARSSNLLKTGSFSSLVYPDPRGEIELRKEVAGYLSISRNLHCFPEQVFITSGYSSG 186 Query: 178 LDIVIRHFVRPCDRVLVDEPGYYMLYGKLKLSGARIVGIPRQADGPDIEALERELKASGK 237 L +V+R +V ++EPG+ + L+L+ IV +P A+G D++ +K + Sbjct: 187 LGLVLRVLGLDGRKVWMEEPGFLLTRKGLELARLNIVPVPVDAEGLDVD---YGIKNAAD 243 Query: 238 PPLFFTQSLAHNPTASDTSPHKAHKILQLADRYDALIVENDAFADFK--PATAPRIATLD 295 L P + S + ++L+ A +A I+E+D ++ + AP +A+LD Sbjct: 244 AALAVVTPGQQAPLGTTLSLRRRLQLLEWAAANNAWIIEDDYLSELQLEGRPAPALASLD 303 Query: 296 QLRRTLYLGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHVSSSEYCERTLDVILSDG 355 + +R +++GSFSK++S LR+GF+ +LA ++I + + S + + DG Sbjct: 304 EGKRVIHIGSFSKTISPGLRLGFVVVPVELAEAFSEIVATLAPAPSPVIQLATAQFMHDG 363 Query: 356 HFSRHTARLRERLAQATDAACHQLQQLGAELFCAPQQSMYLWARFPGFADAKQLAQALMA 415 H+ + RL+ + +D C QL+ AE A + + R P A Q+ + A Sbjct: 364 HYIQRVRRLKRLYSAQSDGLCEQLRMRDAEWIKA---GLAVLLRLPAGAPDVQIVRE--A 418 Query: 416 HHVVLAPGSI 425 ++ +AP + Sbjct: 419 RNIGIAPSPL 428 >gi|152980958|ref|YP_001351821.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 490 Score = 111 bits (278), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 114/477 (23%), Positives = 204/477 (42%), Gaps = 68/477 (14%) Query: 5 LTQTLVQSIRRQIADGAYPPGSRLPSIRVLASQHGCAKNTIVNVFEELTAQGVVEPRRGA 64 L + L + I I +G + PG RLPSIR + H + T+V+ F L ++GV+E + Sbjct: 3 LYEKLAKDIEELIENGVFRPGERLPSIRQTSQHHRLSITTVVHAFLLLESKGVIESHPQS 62 Query: 65 GFFVCATPPR------PKE---EEERSLSRAMDVVWLMREQLKHDPGH-LRLGDGFPPVE 114 G+FV PP+ P+E + ++S +DV L+ L+ + LG +P Sbjct: 63 GYFV-RVPPQSANGKVPQELRTSQPLAISSQVDVSHLVLSTLRSITNDAVPLGSPYPDPS 121 Query: 115 WLHDVRLDKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVHKLAQHGIEAAT----SQLVL 170 +++++ + R +G P L+ ++A+ +E + +++V+ Sbjct: 122 LFPSEKINRYAYGITRRQT----KWGVTDALPPGHPDLIRQIARRYLENGSAIDPNEIVV 177 Query: 171 THGANQALDIVIRHFVRPCDRVLVDEPGYYMLYGKLKLSGARIVGI---PRQADGPDIEA 227 T GA +A+++ ++ + D V V+ P +Y + ++ G R + + PR +G D+ A Sbjct: 178 TVGATEAINLCLQAVGKAGDIVAVESPTFYAMLHAIERMGMRAIEVATHPR--EGIDLAA 235 Query: 228 LE-----RELKASGKPPLFFTQSLAHNPTASDTSPHKAHKILQLADRYDALIVENDA--- 279 LE ++ A P F NP K +++L R ++END Sbjct: 236 LEAILDQHQIAACMVMPNF------QNPLGFQMPDEKKRALVELITRRQVPVIENDVYNE 289 Query: 280 --FADFKPATAPRIATLDQLRRTLYLGSFSKSVSAALRVGFI--ACHRDLASDLADIKML 335 F D P + + + D L+ SFSKS+++A R+G+ +RD L + L Sbjct: 290 LYFGDVHPTS---LKSYDTEGLVLHCASFSKSLTSAYRIGWAMPGRYRDQVEKLKFLNTL 346 Query: 336 V-----HVSSSEYCERTLDVILSDG--HFSRHTARLRERLAQATDAACHQLQQLGAELFC 388 ++ +EY E DG H RH ++ + A AA + G + Sbjct: 347 TTPTIPQLAIAEYLEH-------DGYEHHLRHIRKVYAQQANIMRAAVKRFFPEGTQT-S 398 Query: 389 APQQSMYLWARFPGFADAKQLAQALMAHHVVLAPGSIFH--------VETEQKVPWS 437 PQ LW P D+ +L + + + + PG +F + PWS Sbjct: 399 EPQGGYVLWVELPPQVDSMKLYELALQQGITIGPGYMFSATNGYNNFIRLNYSYPWS 455 >gi|152980994|ref|YP_001352392.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 397 Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/353 (23%), Positives = 148/353 (41%), Gaps = 20/353 (5%) Query: 92 LMREQLK--HDPGHLRLGDGFP-----PVEWLHDVRLDKFHQKVVRTGMGALFGYGSRFG 144 ++RE LK P + G P PVE + F + R G AL YG G Sbjct: 24 VIREILKITMRPDIISFAGGLPSPETFPVEHMKAA----FDNVLSRQGKIAL-QYGPSDG 78 Query: 145 YLPLRQHLVHKLAQHGIEAATSQLVLTHGANQALDIVIRHFVRPCDRVLVDEPGYYMLYG 204 Y PLR+ + L+ G Q+++ G+ QALD++ + + +VLV+ P Y Sbjct: 79 YAPLREWIADSLSIEGATITPDQVLMVSGSQQALDLLGKVLIEENSKVLVETPSYLGALQ 138 Query: 205 KLKLSGARIVGIPRQADGPDIEALERELKASGKPPLFFTQSLAHNPTASDTSPHKAHKIL 264 + + V +P G EA++ + L + HNPT S + ++ Sbjct: 139 AFSVYQPQFVSVPTDDYGLLPEAVDGIADGAR---LLYALPNFHNPTGRTMSVERRIALV 195 Query: 265 QLADRYDALIVENDAFA--DFKPATAPRIATLDQLRRTLYLGSFSKSVSAALRVGFIACH 322 + R ++E+D + ++ P++ T++ +Y+GSFSK ++ +R+G++ Sbjct: 196 ETCARRGLPLIEDDPYGALSYRAEPLPKMLTMNP-SGVIYMGSFSKVLTPGIRLGYVVGP 254 Query: 323 RDLASDLADIKMLVHVSSSEYCERTLDVILSDGHFSRHTARLRERLAQATDAACHQLQQL 382 L L K + +S+ + + + DG + H +R A L + Sbjct: 255 TPLIRKLEQAKQAADLHTSQLTQMVVYEAIKDGFLAEHIPSIRTLYANQCQVMLDALAEF 314 Query: 383 GAE--LFCAPQQSMYLWARFPGFADAKQLAQALMAHHVVLAPGSIFHVETEQK 433 E + P+ M++W P D QL + +A V PG+ F+ +K Sbjct: 315 APEGVKWNKPEGGMFIWVTLPKHIDCMQLLEEAIAQKVAFVPGAPFYANEPEK 367 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,091,148 Number of extensions: 45908 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 7 Length of query: 459 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 373 Effective length of database: 903,079 Effective search space: 336848467 Effective search space used: 336848467 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)