BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2999.p (536 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 556 e-159 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 508 e-145 gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis pro... 507 e-145 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 491 e-140 gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis pro... 478 e-136 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 556 bits (1433), Expect = e-159, Method: Compositional matrix adjust. Identities = 306/533 (57%), Positives = 387/533 (72%), Gaps = 1/533 (0%) Query: 1 MNILGNMNIGKRLTLGFAVILAFSAVVAAISLWRLEQVASSTREMMNAPLKTERLVADWY 60 M NM IG RL LGF V+LA S +AA + +L V++ TR M+ P+ ER+V+DW Sbjct: 1 MIFFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWA 60 Query: 61 TNVNAGIARTLAIAKSADASLGPYFSKDVTASSKMSSEYQKQIQTLLSTPEEKALFDKIG 120 A IART+ +AKSAD +L + +K SK S E ++++ LL+T +EK L+ KI Sbjct: 61 AITKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKIL 120 Query: 121 EQRKIYLSSRDEIIKLKAAGNVEEAMRVLDKVFVPNAAVFQQLMRQLVDIQRKEMDESAM 180 + RK +L+ R+ ++KLK G EA + D F+P A F+ + V+++RK+MD Sbjct: 121 DVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTA 180 Query: 181 QIDAISAQSHIIILVLEGLILLLGIVLARILTLGITKPLQNAVVVSRKVAAGDLSASVQV 240 Q+ + A S +++L ++L GI A LT+GIT+PL+ AV +R+VA GDL+ ++ Sbjct: 181 QLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKA 240 Query: 241 HSQDETGQLLQALKDMNDSLRGIVSNVRSGTDTISTASSEIATGNLDLSSRTEEQAGSLA 300 S+DE GQLL ALKDMND L+ IV VR GT+TI+TAS+EIA GNLDLSSRTE+QA SL Sbjct: 241 ESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLE 300 Query: 301 ETASAMEQLISTVRQNADNARQASQLAQSASSVAEQGGGVVSRVVDTMGAINASSRKIVD 360 ETAS+ME+L STV+QNADNARQA+QLA SAS VA +GG VVS+VV TM +IN SSRKIVD Sbjct: 301 ETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELIHD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSASAAKEIK LI D Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGD 420 Query: 421 SVAKVGDGSRLVEQAGSTMQEVVSSVRHVTDIVAEISAASAEQTNGIEQINLAITQMDQV 480 SV KV G++LV +AG+TM E+V+S+R VTDI+ EI+AAS EQ+ GIEQIN AI QMD V Sbjct: 421 SVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHV 480 Query: 481 TQQNAALVEQAAAAAASMQDQAGRLAQMVSIFRLHEG-EALAQREIDVTPVMP 532 TQQNA+LVE+AAAAA SMQDQA +L Q+V F+L EA R VT + P Sbjct: 481 TQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQEANPPRASGVTRLAP 533 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 508 bits (1307), Expect = e-145, Method: Compositional matrix adjust. Identities = 288/526 (54%), Positives = 374/526 (71%) Query: 6 NMNIGKRLTLGFAVILAFSAVVAAISLWRLEQVASSTREMMNAPLKTERLVADWYTNVNA 65 N+ I RL+ GFA++L ++ + + RL++V +S M L ERL +W + V+ Sbjct: 5 NLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAVDV 64 Query: 66 GIARTLAIAKSADASLGPYFSKDVTASSKMSSEYQKQIQTLLSTPEEKALFDKIGEQRKI 125 ARTLA AK+ A +F K + +S ++E QK+I++++ TPE+K LF+++ R Sbjct: 65 NGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVVARNA 124 Query: 126 YLSSRDEIIKLKAAGNVEEAMRVLDKVFVPNAAVFQQLMRQLVDIQRKEMDESAMQIDAI 185 Y R + KLKA G + EA ++++ +P + + ++ ++K +DE+ I + Sbjct: 125 YRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGTSIQSA 184 Query: 186 SAQSHIIILVLEGLILLLGIVLARILTLGITKPLQNAVVVSRKVAAGDLSASVQVHSQDE 245 +++ L + LG+ A L + IT+PL AV V+R VA+GDLSA ++V S DE Sbjct: 185 FLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIEVSSNDE 244 Query: 246 TGQLLQALKDMNDSLRGIVSNVRSGTDTISTASSEIATGNLDLSSRTEEQAGSLAETASA 305 TGQL+QALKDM SL VS VRSGT+TI+TAS +IA+GNLDLSSRTEEQA SL ETA++ Sbjct: 245 TGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSLGETAAS 304 Query: 306 MEQLISTVRQNADNARQASQLAQSASSVAEQGGGVVSRVVDTMGAINASSRKIVDIIGVI 365 M QL STVRQNADNARQA+ LA SAS VA +GG VVS VVDTM +IN S+RKIVDII VI Sbjct: 305 MGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIVDIISVI 364 Query: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELIHDSVAKV 425 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI DSV KV Sbjct: 365 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGDSVGKV 424 Query: 426 GDGSRLVEQAGSTMQEVVSSVRHVTDIVAEISAASAEQTNGIEQINLAITQMDQVTQQNA 485 GS+LV +AGSTM E+V SV+ VTDI+AEI AAS EQ++GI+Q+N AI QMDQVTQQNA Sbjct: 425 EAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQVTQQNA 484 Query: 486 ALVEQAAAAAASMQDQAGRLAQMVSIFRLHEGEALAQREIDVTPVM 531 ALVE+AAAAA S+QDQAG LA++VS F+L + +D PV+ Sbjct: 485 ALVEEAAAAAESLQDQAGNLARVVSQFKLDGNQPAFVSSLDDIPVV 530 >gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 507 bits (1305), Expect = e-145, Method: Compositional matrix adjust. Identities = 282/516 (54%), Positives = 381/516 (73%) Query: 1 MNILGNMNIGKRLTLGFAVILAFSAVVAAISLWRLEQVASSTREMMNAPLKTERLVADWY 60 M+ L N IG RL +GF ++LA S AI+L Q A +TR MM PL ER+ +DWY Sbjct: 1 MSFLSNFRIGTRLAIGFILVLALSVASTAIALIHARQNAEATRLMMEKPLAKERITSDWY 60 Query: 61 TNVNAGIARTLAIAKSADASLGPYFSKDVTASSKMSSEYQKQIQTLLSTPEEKALFDKIG 120 + + IART IA+S D +L F+ + S+K S K ++ ++++ E+ L+ + Sbjct: 61 VFIYSAIARTSMIARSTDDTLSDVFADVIADSTKQGSALLKSLEGMITSDAERKLYQQTI 120 Query: 121 EQRKIYLSSRDEIIKLKAAGNVEEAMRVLDKVFVPNAAVFQQLMRQLVDIQRKEMDESAM 180 E RK Y +++++ K GN EA R ++F+P A +Q+ + + + +QRK +D+ + Sbjct: 121 ELRKAYQKGKEDVMNAKKGGNKAEAERAYLQIFLPAAKAYQEKVLEFLSVQRKAIDQISR 180 Query: 181 QIDAISAQSHIIILVLEGLILLLGIVLARILTLGITKPLQNAVVVSRKVAAGDLSASVQV 240 ID +S +++ L L++LLG A ++T ITKPL++A+ V+ + A GDL+ + Sbjct: 181 DIDDAHQRSLNLMIGLGVLLILLGAACAIVITRSITKPLRSAIDVASRAADGDLTGDIGK 240 Query: 241 HSQDETGQLLQALKDMNDSLRGIVSNVRSGTDTISTASSEIATGNLDLSSRTEEQAGSLA 300 S+DE G L++AL MND L+ IV++V++GTD I+TAS+EIA GNLDLSSRTE+QA SL Sbjct: 241 PSKDEIGDLMRALGGMNDGLKKIVNDVKAGTDFINTASAEIAHGNLDLSSRTEQQAASLE 300 Query: 301 ETASAMEQLISTVRQNADNARQASQLAQSASSVAEQGGGVVSRVVDTMGAINASSRKIVD 360 ETAS+ME+L STV+QNA+NA+QA+QLA SAS VA +GG VV ++ TMGAIN+SSRKIVD Sbjct: 301 ETASSMEELTSTVKQNAENAQQANQLAVSASDVAAKGGAVVKEMISTMGAINSSSRKIVD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELIHD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI D Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKSLIGD 420 Query: 421 SVAKVGDGSRLVEQAGSTMQEVVSSVRHVTDIVAEISAASAEQTNGIEQINLAITQMDQV 480 SV+ V GS+LV +AG TM +VV+S+RHVTDI+ EI AAS EQ++GIEQ+N AI+QMDQV Sbjct: 421 SVSNVDAGSKLVSEAGKTMDDVVNSIRHVTDIMNEIMAASQEQSSGIEQVNTAISQMDQV 480 Query: 481 TQQNAALVEQAAAAAASMQDQAGRLAQMVSIFRLHE 516 TQQNAALVE+AAAA+ S++DQA +LAQ+V++F+L E Sbjct: 481 TQQNAALVEEAAAASQSLRDQADKLAQIVNVFKLDE 516 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 491 bits (1265), Expect = e-140, Method: Compositional matrix adjust. Identities = 290/514 (56%), Positives = 366/514 (71%), Gaps = 4/514 (0%) Query: 4 LGNMNIGKRLTLGFAVILAFSAVVAAISLWRLEQVASSTREMMNAPLKTERLVADWYTNV 63 + N+ IG RL L FAVIL A + + +WRL+ VA +T M A K ERL +WY Sbjct: 3 ISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEEAAHK-ERLTHEWYLGN 61 Query: 64 NAGIARTLAIAKSADASLGPYFSKDVTASSKMSSEYQKQIQTLLSTPEEKALFDKIGEQR 123 A RT A +S DA + F K++ S+ S+ Q +I L+ + E K L +GE+R Sbjct: 62 VANAIRTAARIRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKLMSVVGEKR 121 Query: 124 KIYLSSRDEIIKLKAAGNVEEAM---RVLDKVFVPNAAVFQQLMRQLVDIQRKEMDESAM 180 Y+ R ++ KLKA N + ++++ P A + + ++ +V Q+ + Sbjct: 122 TAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQVIFQRAKA 181 Query: 181 QIDAISAQSHIIILVLEGLILLLGIVLARILTLGITKPLQNAVVVSRKVAAGDLSASVQV 240 +DA+ A I++ L + L+L LA +L+ IT+PL AV V+R VA+GDL +Q Sbjct: 182 DVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVASGDLRNKIQS 241 Query: 241 HSQDETGQLLQALKDMNDSLRGIVSNVRSGTDTISTASSEIATGNLDLSSRTEEQAGSLA 300 S DETGQLL+AL+DMND L VS VR+G +TI+TAS++IA GNLDLSSRTEEQA SL Sbjct: 242 SSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQASSLE 301 Query: 301 ETASAMEQLISTVRQNADNARQASQLAQSASSVAEQGGGVVSRVVDTMGAINASSRKIVD 360 ETAS+ME+L STV+QNADNARQA+QLA SAS VAE+GG VVSRVVDTM INAS++KIVD Sbjct: 302 ETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKIVD 361 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELIHD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI D Sbjct: 362 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGD 421 Query: 421 SVAKVGDGSRLVEQAGSTMQEVVSSVRHVTDIVAEISAASAEQTNGIEQINLAITQMDQV 480 SV KV GS+LV +AG TM EVV SV+HVTDI++EI AAS EQ+ GIEQ+N AI QMDQV Sbjct: 422 SVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQV 481 Query: 481 TQQNAALVEQAAAAAASMQDQAGRLAQMVSIFRL 514 TQQNAALVE+AAAAA S+ +QA +LA+ VS+F+L Sbjct: 482 TQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKL 515 >gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 478 bits (1231), Expect = e-136, Method: Compositional matrix adjust. Identities = 286/530 (53%), Positives = 379/530 (71%), Gaps = 7/530 (1%) Query: 4 LGNMNIGKRLTLGFAVILAFSAVVAAISLWRLEQVASSTREMMNAPLKTERLVADWYTNV 63 + NM IG RL LGF +IL A + A + RLE + +++R +++ LK ++ DW Sbjct: 3 IANMKIGVRLGLGFGLILLLVAAMGATGIMRLENINNASRNLVDQSLKKQKAAEDWLLAT 62 Query: 64 NAGIARTLAIAKSADASLGPYFSKDVTASSKMSSEYQKQIQTLLSTPEEKALFDKIGEQR 123 + RT+A+ KSAD +F K +TA SK ++ Q ++ L TPEEK LF ++G++R Sbjct: 63 SVNGVRTVALVKSADPETQQFFQKAITAQSKQITDIQNGVEASLVTPEEKQLFAEVGKKR 122 Query: 124 KIYLSSRDEIIKLKAAGNVEEAMRVLDKVFVPNAAVFQQLMRQLVDIQRKEMDESAMQID 183 +Y+ R I +K GN EA +++D +P + + +R+++ + E+ + I Sbjct: 123 AVYVDLRKAIFAVKEKGNEAEAKQLIDSKMIPALDAYVESVREVLAHYQNEVKLADQSIT 182 Query: 184 AISAQSHIIILVLEGLILLLGIVLARILTLGITKPLQNAVVVSRKVAAGDLSA-SVQVHS 242 A A + +++ + LLLG ++A LT+GIT+PLQ A+ V+ VA GDL+A S + Sbjct: 183 ADYASGRMTLIIGAVIALLLGALIAWRLTVGITRPLQEALSVAESVAEGDLTARSTMPAA 242 Query: 243 QDETGQLLQALKDMNDSLRGIVSNVRSGTDTISTASSEIATGNLDLSSRTEEQAGSLAET 302 DE G LL+AL+ M DSL V+ +R GTDTI+TASSEIA+GNLDLSSRTE+QA SL ET Sbjct: 243 NDEAGLLLKALRRMQDSLAKTVTQIRMGTDTIATASSEIASGNLDLSSRTEQQASSLEET 302 Query: 303 ASAMEQLISTVRQNADNARQASQLAQSASSVAEQGGGVVSRVVDTMGAINASSRKIVDII 362 AS+ME+L STV+QNADN+RQA+QLA +AS+VA +GG VVS VV+TMG+IN S++KIVDII Sbjct: 303 ASSMEELTSTVKQNADNSRQANQLAVAASAVAVKGGSVVSEVVNTMGSINESAKKIVDII 362 Query: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELIHDSV 422 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI DSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKALIGDSV 422 Query: 423 AKVGDGSRLVEQAGSTMQEVVSSVRHVTDIVAEISAASAEQTNGIEQINLAITQMDQVTQ 482 KV GS+LV +AG+TM E+V V+ V DI+AEI+AAS EQ++GIEQ+N AI QMDQVTQ Sbjct: 423 EKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAIGQMDQVTQ 482 Query: 483 QNAALVEQAAAAAASMQDQAGRLAQMVSIFRLHEGEALAQREIDVTPVMP 532 QNAALVE+AAAAA S+QDQA LAQ VS+F++ G A +Q P P Sbjct: 483 QNAALVEEAAAAAESLQDQAKNLAQAVSVFQIGSGYASSQ------PAAP 526 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.126 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 810,182 Number of extensions: 24623 Number of successful extensions: 252 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 194 Number of HSP's successfully gapped: 21 Length of query: 536 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 448 Effective length of database: 895,685 Effective search space: 401266880 Effective search space used: 401266880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)