BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2998.p (302 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981563|ref|YP_001352068.1| LysR family transcriptional reg... 305 3e-84 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 231 6e-62 gi|152980272|ref|YP_001353541.1| LysR family transcriptional reg... 222 2e-59 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 208 3e-55 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 187 8e-49 >gi|152981563|ref|YP_001352068.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 305 bits (780), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 137/299 (45%), Positives = 195/299 (65%), Gaps = 1/299 (0%) Query: 1 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 MD+ KQI F S +AAA A + P M+GRR+D LE+RLGV+LL R+TR++ LT Sbjct: 1 MDKLKQIEAFVMAVEHNSFAAAALALQVTPVMVGRRIDTLEKRLGVRLLHRSTRRLALTE 60 Query: 61 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRHHVAPLLPSFLAEHRD 120 EG+ +LE C+++L +LE AESA+S + +G L++SAPA FGR HVAP FL +H Sbjct: 61 EGSVYLEHCRKMLNELEHAESALSAGHNKVTGHLIVSAPASFGRQHVAPYAQEFLEQHPG 120 Query: 121 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPSYLRRHGTPQT 180 + ++ NL DR+ D++ EG D+ IRI D N V++KLA N RV+ Y ++HG P+T Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGNIDPNFVAIKLAANKRVVCGTREYFKKHGKPKT 180 Query: 181 PDELVRHNCLAMSSE-GSQRGWTLKQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWR 239 D+L HNCL+ + + G QRGW GK + G++ CNDGE+LH W G G+AWR Sbjct: 181 LDDLANHNCLSFNLQGGQQRGWYFNYRGKTVSVRAQGSLDCNDGELLHRWMTEGLGIAWR 240 Query: 240 SMWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQPDYW 298 S+WE+ +E+G L TVLD +A P I AV+ Q+R++P ++R F+ L+ Y+QP YW Sbjct: 241 SVWEIQRQLESGMLETVLDDYAIPEYDIMAVYPQQRNVPAKVRLFISHLKAMYSQPGYW 299 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 231 bits (588), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 115/294 (39%), Positives = 181/294 (61%), Gaps = 1/294 (0%) Query: 1 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 M+ ++ F+ + +GSL+A AR G+ P + +RL LE+RLGV+LL RTTR + +T+ Sbjct: 1 MNDLSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTH 60 Query: 61 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRHHVAPLLPSFLAEHRD 120 EG +L + RIL ++E+ E AVS A G L I+A GFGR H+AP + F+ ++ + Sbjct: 61 EGEIYLAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPE 120 Query: 121 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPSYLRRHGTPQT 180 + + L L+DR A++I + D+ IRI + D+ +++ K+A N R++ AAP+Y++RHGTP Sbjct: 121 IEVQLQLSDRPANLIDQAFDIGIRIGEMPDARIIARKIAANRRLLCAAPAYIKRHGTPSV 180 Query: 181 PDELVRHNCLAMSSEGSQRG-WTLKQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWR 239 P +L + C+ + + G W L + + KV G + NDGE WALAG G+ R Sbjct: 181 PRDLQKLQCIVLRENDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGILMR 240 Query: 240 SMWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYA 293 S W+V A + +G LV VL ++ P IYAV+ +R +L ++ AFVDF+ +A Sbjct: 241 SQWDVAAYLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDFVSARFA 294 >gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 222 bits (565), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 114/293 (38%), Positives = 172/293 (58%), Gaps = 1/293 (0%) Query: 1 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 MD ++ F+ + RGSL+AAA+ G+ P + +RL +E RL V+LL RTTR+I LT Sbjct: 1 MDGISDLAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTP 60 Query: 61 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRHHVAPLLPSFLAEHRD 120 EG +L D R++A+LE E +S + A G L +SA GFGR H+ P L +F + + Sbjct: 61 EGEIYLADGTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHITPQLSAFARLYPE 120 Query: 121 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPSYLRRHGTPQT 180 V + L+L DR +++ +G D IR + D+ L + K+A+N R++ A+P+YL++HGTP Sbjct: 121 VEVQLHLTDRPVNLVEQGFDADIRFGQIPDARLSARKIADNRRLVCASPAYLQKHGTPLV 180 Query: 181 PDELVRHNCLAMSSEGSQRG-WTLKQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWR 239 P +L +HNC+ + G W K KV G + NDGE +WAL G+G+ R Sbjct: 181 PRDLQQHNCILLRESDEIYGSWHFSSGIKQETVKVRGALSANDGECATSWALDGQGIVVR 240 Query: 240 SMWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAY 292 S W+V + +G L VL+++ P IY VF + HL + RA VDF+ A+ Sbjct: 241 SEWDVAPYLRSGRLRAVLEEWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAF 293 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 208 bits (530), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 165/288 (57%), Gaps = 1/288 (0%) Query: 2 DQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNE 61 D ++ F +A G+LSAAARA I P +RL LE RLGV+L+ RTTR I LT+E Sbjct: 60 DITSELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSE 119 Query: 62 GAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRHHVAPLLPSFLAEHRDV 121 G +L RILA++++ E AVS G L ++A GFGR +APL+ F+ + V Sbjct: 120 GEIYLGYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQV 179 Query: 122 TLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPSYLRRHGTPQTP 181 + ++D+ D++ G D+AIR TL D+ L + KL N R + A+P YL RHGTPQT Sbjct: 180 EVQFEVSDKPIDLVENGFDLAIRFGTLPDTRLNARKLMSNRRFLCASPIYLERHGTPQTL 239 Query: 182 DELVRHNCLA-MSSEGSQRGWTLKQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRS 240 +L RH C+ ++ + W + G+ V KV + NDG+++ WAL G+ RS Sbjct: 240 ADLSRHRCITHRQNDEAAATWRFTRDGRNEVIKVESALSSNDGDIVLGWALDAHGILIRS 299 Query: 241 MWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFL 288 W++ +++G L VL + P+ ++ + RR+ R RAF+DFL Sbjct: 300 EWDLAKYVKSGRLKIVLPDYVLPSADLFVYYPNRRNQSTRARAFIDFL 347 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 187 bits (474), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 112/295 (37%), Positives = 157/295 (53%), Gaps = 7/295 (2%) Query: 7 ISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNEGAAFL 66 I F A GS +AAA G+ PA + R + LE RLGV+L RTTR+I LT+ G + Sbjct: 13 IELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVYF 72 Query: 67 EDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRHHVAPLLPSFLAEHRDVTLTLN 126 E C+ LA L DAE VS + +G L IS P +G + + PLLP F + DV + ++ Sbjct: 73 EQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQVEVH 132 Query: 127 LNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPSYLRRHGTPQTPDELVR 186 +++R D E D+AIR TDSNL++ KL E V+VAAPSYL+R G P+T ++L + Sbjct: 133 ISNRNIDFAEEAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSYLKRAGKPKTLEDLQK 192 Query: 187 HNCLA--MSSEGSQRGWTLKQSGKVS-----VYKVGGNMVCNDGEVLHNWALAGRGLAWR 239 H C+ + S G + W +GKV + GG D + A +G GL Sbjct: 193 HECIQFELPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDVLGIVTLARSGAGLVQT 252 Query: 240 SMWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQ 294 + V + G LV +L +F A + ++ RHL R+RAFVDFL Q Sbjct: 253 YRFIVEDDLREGRLVELLPQFGATSRPFILLYPHARHLSSRVRAFVDFLMEKLVQ 307 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 659,347 Number of extensions: 26917 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 28 Length of query: 302 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 219 Effective length of database: 914,170 Effective search space: 200203230 Effective search space used: 200203230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)