BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2997.p
         (528 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980674|ref|YP_001353632.1| malate synthase [Janthinobacter...   860   0.0  

>gi|152980674|ref|YP_001353632.1| malate synthase [Janthinobacterium
           sp. Marseille]
          Length = 532

 Score =  860 bits (2221), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/529 (77%), Positives = 455/529 (86%), Gaps = 2/529 (0%)

Query: 2   TQLKLPTGMEISGEIKPGYENVLTFEALSLVAKLSRAFEGRRQELLAARAERVKRLDAGE 61
           + + +P G+EI GE K  YE VLT +AL+LV KLSR+FE RRQELLA R +R KR+DAGE
Sbjct: 4   STIDIPAGIEIEGEFKADYEQVLTPDALALVVKLSRSFEARRQELLAIRVQRAKRIDAGE 63

Query: 62  RPDFLKETESIRTGDWKIAPIPEALKCRRVEITGPVERKMVINAFNSGADSYMTDFEDSN 121
           RPDFL ET +IR  DW+IAPIPEAL CRRVEITGPV+RKMVINAFNSGAD YM DFED+N
Sbjct: 64  RPDFLPETAAIRAADWRIAPIPEALACRRVEITGPVDRKMVINAFNSGADVYMADFEDAN 123

Query: 122 SPVWDNQISGQINLYDAIRRTISLESNGKSYKLNDKIATLVVRPRGWHLDEKHVTLDGKR 181
           +P W+NQI GQ+NL DA+R +I+ E NGK YKLN +IATL+VRPRGWHLDEKHV +DGKR
Sbjct: 124 TPNWENQIEGQLNLIDAVRGSITTERNGKQYKLNARIATLMVRPRGWHLDEKHVLVDGKR 183

Query: 182 ISGGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVMAQNEIGLPQGTI 241
           +SGGIFDFALF+FHNA E   RG GP+FYLPK+ESHLEARLWNDIFVM Q E+GLPQGTI
Sbjct: 184 VSGGIFDFALFMFHNAHELHKRGEGPFFYLPKLESHLEARLWNDIFVMTQRELGLPQGTI 243

Query: 242 KATVLIETITAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAKVTM 301
           KATVLIETI AAFEM+EILYEL++HSAGLNAGRWDYIFSCIKKF+ DKDFCLADRAKVTM
Sbjct: 244 KATVLIETILAAFEMDEILYELKDHSAGLNAGRWDYIFSCIKKFRLDKDFCLADRAKVTM 303

Query: 302 TAPFMRAYALLLLKTCHKRGAPAIGGMSALIPIKNDPEKNAIAMQGIINDKRRDATDGYD 361
           T PFMR+YALLLLKTCH+RGA A+GGM+ALIPIKNDP KN +AM  +  DK RDA DGYD
Sbjct: 304 TVPFMRSYALLLLKTCHRRGAHAMGGMAALIPIKNDPVKNELAMNAVRIDKERDAIDGYD 363

Query: 362 GGWVAHPGLVEASMKEFVAVLGDKPNQFEKQRPDVDVKAADLLNFQPETPITEAGLRYNI 421
           GGWVAHPGLVE +M EF  VLGDKPNQ  K R DV   A DLL+FQPETPITEAGLRYNI
Sbjct: 364 GGWVAHPGLVELAMTEFKKVLGDKPNQIGKLRDDVHATADDLLDFQPETPITEAGLRYNI 423

Query: 422 NVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRSAKGKLEDGRKVTADMVRA 481
           NVGIHYLG+WL GNGCVPIHNLMEDAATAEISR+QVWQWIRS KG L+DGRK+TA+MVR 
Sbjct: 424 NVGIHYLGSWLDGNGCVPIHNLMEDAATAEISRSQVWQWIRSNKGVLDDGRKITAEMVRP 483

Query: 482 MIPEELAKVKQVA--GEGPTYDRAAKIFEEMSTSETFAEFLTLPLYEEI 528
           MI EEL KVKQ A  G  P+Y RAA+IFEEMSTS +FAEFLTLPLYEEI
Sbjct: 484 MIQEELLKVKQDAPNGSSPSYVRAAQIFEEMSTSTSFAEFLTLPLYEEI 532


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,210,566
Number of extensions: 49979
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 440
Effective length of database: 895,685
Effective search space: 394101400
Effective search space used: 394101400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)