BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2995.p
         (165 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980723|ref|YP_001353100.1| 2-C-methyl-D-erythritol 2,4-cyc...   268   2e-73

>gi|152980723|ref|YP_001353100.1| 2-C-methyl-D-erythritol
           2,4-cyclodiphosphate synthase [Janthinobacterium sp.
           Marseille]
          Length = 168

 Score =  268 bits (684), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 128/159 (80%), Positives = 141/159 (88%)

Query: 5   FPFRIGQGYDCHALVEGRPLILGGVTIPHKKGLLGHSDADALLHAITDALFGAAALGDIG 64
            PFRIGQGYDCHALVEGR LI+GGVTIPH  GLLGHSDAD LLHAITDALFGAAALGDIG
Sbjct: 9   LPFRIGQGYDCHALVEGRKLIIGGVTIPHSTGLLGHSDADVLLHAITDALFGAAALGDIG 68

Query: 65  RHFPDTDPQFKGADSRVLLREAAKRLAAAGYTVGNVDATIIAQAPKMAPHIPAMISHVAA 124
           RHFPDT  +F GADSRVLLREA KR+AAAGY +GNVDATIIAQ PKM PHIP M++H+AA
Sbjct: 69  RHFPDTAVEFAGADSRVLLREAVKRVAAAGYRIGNVDATIIAQRPKMVPHIPTMVAHIAA 128

Query: 125 DLGISEGQVNIKAKTNEKMGFLGREEGIATEAVVLIHRQ 163
           DLG++  QV+IKAKTNEK+G+LGREEGIA EAV LI+R 
Sbjct: 129 DLGVAPDQVSIKAKTNEKLGYLGREEGIAAEAVALIYRS 167


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 382,482
Number of extensions: 14932
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 89
Effective length of database: 940,049
Effective search space: 83664361
Effective search space used: 83664361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)