BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2994.p
         (221 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979851|ref|YP_001353099.1| 2-C-methyl-D-erythritol 4-phosp...   237   5e-64

>gi|152979851|ref|YP_001353099.1| 2-C-methyl-D-erythritol
           4-phosphate cytidylyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 235

 Score =  237 bits (604), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 130/224 (58%), Positives = 158/224 (70%), Gaps = 15/224 (6%)

Query: 1   MGGQIPKQYMMLAGQPMLQHALQTFATHARIAHTFVVVSAEDGWIDTLMTPALQ--ARVS 58
           MG +IPKQY+ +AG+PML+H L TF     I HT+VVVSAEDG+ID  M  AL   +  +
Sbjct: 19  MGEKIPKQYVQIAGKPMLRHVLDTFCRADVITHTYVVVSAEDGYIDATMA-ALHDSSYAT 77

Query: 59  ILRVGGPTRQDSVFNGLNAMRAEAG----DADWVLVHDAARPGLDAALIDRLLDALEGDE 114
           +LRVGG TR  SV NGL AM+ +      D DWVLVHDAARPGL   LID+L++ L+ DE
Sbjct: 78  VLRVGGATRHQSVLNGLQAMQEQVNEPINDDDWVLVHDAARPGLSIGLIDKLINILQDDE 137

Query: 115 VGGLLALPMVDTLKRSDAQCPARSLETVPRAGLWAAQTPQMFPYTLLQRALHQAQQQGRL 174
           VGGLLA+P+VDTLKR+ A+   R  +TV R  LWAAQTPQMF Y LL++AL QA      
Sbjct: 138 VGGLLAMPVVDTLKRAGAE--GRVDQTVTRDRLWAAQTPQMFRYGLLRKALEQAT----- 190

Query: 175 GEITDDASAIEMLGLRPRLVEGSPRNLKVTLAQDAALAEFFLKG 218
             +TD+ASAIE  GL+P+LVEG  RN KVTL  D ALAE +LKG
Sbjct: 191 -AVTDEASAIEAQGLQPKLVEGDARNFKVTLPHDVALAELYLKG 233


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 462,936
Number of extensions: 15400
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 141
Effective length of database: 925,261
Effective search space: 130461801
Effective search space used: 130461801
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)