BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2991.p
         (120 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982070|ref|YP_001353096.1| hypothetical protein mma_1406 [...   168   7e-44

>gi|152982070|ref|YP_001353096.1| hypothetical protein mma_1406
           [Janthinobacterium sp. Marseille]
          Length = 119

 Score =  168 bits (426), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 97/119 (81%)

Query: 1   MNQELVFDPQTQTGRDLVWWLYLAHAACLVFSLGMLSWLPLIVNYLKRGDVRDTFLYTHH 60
           MNQ+LV D   Q+ ++L WWLYL HAA LVFSLG  S++PLI+NY+KR D  +TF+Y+HH
Sbjct: 1   MNQDLVLDSSLQSAKNLAWWLYLGHAASLVFSLGAFSFIPLIINYVKREDSANTFVYSHH 60

Query: 61  RWQIRSFWWYLFWVFAGGVLWMTVIGIPLAVLVFSLAWIWKAYRLIKGFLDLQDNKPMP 119
            WQIRSFWWYL W+  GGVL+MT++GIP A L++++AW+WK YR+IKG +DL DNKPMP
Sbjct: 61  SWQIRSFWWYLVWMALGGVLFMTIVGIPAAFLLWTVAWLWKLYRMIKGIVDLNDNKPMP 119


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.332    0.145    0.534 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 351,192
Number of extensions: 14789
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 48
Effective length of database: 954,837
Effective search space: 45832176
Effective search space used: 45832176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 124 (52.4 bits)