BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2990.p (541 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981539|ref|YP_001351708.1| methyl-accepting chemotaxis pro... 702 0.0 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 159 3e-40 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 144 2e-35 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 143 3e-35 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 141 8e-35 >gi|152981539|ref|YP_001351708.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/541 (71%), Positives = 459/541 (84%), Gaps = 1/541 (0%) Query: 1 MKNWTIKQRLLGSFGLILLLMALMAGISALNLGRIDKSATALRRDSTPGLYHSTQINAAW 60 MKNWTIKQR+LGSF LILLLMALMA ++ + L +ID +A++L+ DSTPGL+ S INA W Sbjct: 1 MKNWTIKQRILGSFALILLLMALMAAVAWVRLAKIDDAASSLQDDSTPGLHASAMINAYW 60 Query: 61 YENLLLTQQIAQIDTNDAERQANLALLRRNAERLDKLQEDYDQTIFSDTDRNLFEQFKQV 120 +EN +L QQIA+I +DA R+ +LA L+ N E ++ LQ Y+ +IF+ D+ FE+FKQ Sbjct: 61 FENYMLIQQIAEIADSDANRKNDLAKLQVNNEHINALQVQYENSIFAADDKAQFEEFKQA 120 Query: 121 RQRYRALVGEVLKMDFSQRPP-IDKLFNEQIRPQWRAGYQLTQRMVDTNKAIADKAASRI 179 R +Y+ + E+L+ D S+ P + KLF EQ+RP W+ + L Q++ + NK IAD++A I Sbjct: 121 RAKYQQIQQEILRQDLSRTSPLVHKLFIEQLRPAWKDAHALIQKITENNKVIADQSAQHI 180 Query: 180 NEAVTAAQFAMMTALMAALLAAMVCGFFLLRAINEPLQKLMGILDVMRSGDFSRRVALDR 239 ++V A+ M+ AL+ ALLAA++ G+FLLRAI P+Q+L+GILDVMRSGDFS+R+ L+R Sbjct: 181 IDSVHQAKINMVAALVVALLAAIISGYFLLRAITIPMQRLIGILDVMRSGDFSQRLHLER 240 Query: 240 NDEFGVLGSGFDRMTDELAALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEI 299 DEF L SGF+RMTDEL LV QAQKSS +V++SVTEIAAT++QQQATAAETAATTTEI Sbjct: 241 KDEFEHLASGFNRMTDELTILVGQAQKSSGQVSSSVTEIAATSKQQQATAAETAATTTEI 300 Query: 300 GATSREIHATSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMGETMHNVMDAAGSVSAKL 359 GATSREI ATSRDLVRTMNEVS+VSEQ + LAG+GQ GLTRM +TM VMDAAGSVS KL Sbjct: 301 GATSREIFATSRDLVRTMNEVSLVSEQAATLAGSGQTGLTRMEDTMQAVMDAAGSVSGKL 360 Query: 360 AILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQTA 419 AILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGE+GRGFSVVATEIRRLADQTA Sbjct: 361 AILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEYGRGFSVVATEIRRLADQTA 420 Query: 420 VATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRAMQDVQTAGSQLSQIIAQVQALAPRFQ 479 VATYDIE+MVKEIQSAVAAGVMGMDKFSDQVRR MQ+VQ GSQLSQIIAQVQALAPRFQ Sbjct: 421 VATYDIELMVKEIQSAVAAGVMGMDKFSDQVRRGMQEVQQVGSQLSQIIAQVQALAPRFQ 480 Query: 480 IVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELNVVSNELRNGVSRFKV 539 +VNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAI+EL++VSN LRNGVSRFKV Sbjct: 481 VVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIDELHLVSNGLRNGVSRFKV 540 Query: 540 S 540 S Sbjct: 541 S 541 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 144/550 (26%), Positives = 263/550 (47%), Gaps = 50/550 (9%) Query: 1 MKNWTIKQRLLGSFGLILLLMALMAGISALNLGRIDKSATALRRDSTPGLYHSTQINAAW 60 + N I RL F L+L LM +M + L L + SA + + P ++ W Sbjct: 3 ITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLP----KERLAQEW 58 Query: 61 YENLLLT--QQIAQIDTNDAERQANL-ALLRRNAERLDKLQEDYDQTIFSDTDRNLFEQF 117 + + + +A T AE QA + + + R ++LQ++ + I + D+ LFE+ Sbjct: 59 LSAVDVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEEL 118 Query: 118 KQVRQRYRALVGEVLKMDFSQR-PPIDKLFNEQIRPQWRAGYQLTQRMVDTNKAIADKAA 176 R YR + V K+ + P L NE++ P A ++ K + D+A Sbjct: 119 VVARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAG 178 Query: 177 SRINEAVTAAQFAMMTALMAALLAAMVCGFFLLRAINEPLQKLMGILDVMRSGDFSRRVA 236 + I A + + ++ L AA+ + + L +I PL + + + + SGD S ++ Sbjct: 179 TSIQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIE 238 Query: 237 LDRNDEFGVLGSGFDRMTDELAALVSQAQKSSARVATSVTEIAAT-------ARQQQATA 289 + NDE G L MT L VS+ + + +AT+ +IA+ +Q ++ Sbjct: 239 VSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSL 298 Query: 290 AETAATTTEIGATSREIHATSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMGETMHNVM 349 ETAA+ ++ +T R+ +R Q ++LA + + G + V+ Sbjct: 299 GETAASMGQLTSTVRQNADNAR--------------QANSLAMSASDVAVKGGSVVSEVV 344 Query: 350 DAAGSVSAKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVAT 409 D +A +NE A I +++ I +A QTN+L+LNAA+EA +AGE GRGF+VVA+ Sbjct: 345 DT-------MASINESARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 397 Query: 410 EIRRLADQTAVATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRAMQDVQTAGSQLSQIIA 469 E+R LA ++A A +I++++ + V AG K ++ M ++ + +++ I+A Sbjct: 398 EVRNLAQRSAAAAKEIKILIGDSVGKVEAG----SKLVNEAGSTMNEIVDSVKRVTDIMA 453 Query: 470 QVQALAPRFQIVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELNVVSNE 529 ++ A + Q Q++ +Q+NQA+ Q+ + QQ +++++ A E L + Sbjct: 454 EIMAAS----------QEQSSGIDQVNQAIGQMDQVTQQNAALVEEAAAAAESLQDQAGN 503 Query: 530 LRNGVSRFKV 539 L VS+FK+ Sbjct: 504 LARVVSQFKL 513 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 135/520 (25%), Positives = 248/520 (47%), Gaps = 56/520 (10%) Query: 3 NWTIKQRLLGSFGLILLLMALMAGISAL---NLGRIDK---SATALRRDSTPGLYHSTQI 56 N I RL FG I +LMA + ++ L ++G I+ + ++ ++ + +T+ Sbjct: 5 NVRIGARLAMGFGAIFILMATLIVLALLRFNSIGEINHQMVDSDWVKAEAAATIDVTTRA 64 Query: 57 NAAWYENLLLTQQIAQIDTNDAERQANLALLRRNAERLDKLQEDYDQTIFSDTDRNLFEQ 116 NA LL+ +T A+ A A + +N + +D+ D+ I++D + L ++ Sbjct: 65 NARRNMELLM-------ETESAKVAALFADIAKNKKAIDEAVVVLDKLIYTDKGKALMQE 117 Query: 117 FKQVRQRYRALVGEVLKMDF-SQRPPIDKLFNEQIRPQWRAGYQLTQRMVDTNKAIADK- 174 FK+ R +Y A G+V K+ + R ++ + P + ++ K + ++ Sbjct: 118 FKEARGKYVASFGKVGKLVADNHRDEARQILLSETLPALDVVQGIVAQLTAVQKKMVEER 177 Query: 175 ---AASRINEAVTAAQFAMMTALMAALLAAMVCGFFLLRAINEPLQKLMGILDVMRSGDF 231 AA I+ A+ Q M+ +AA+ + +++ +I +PL + + I + +GD Sbjct: 178 GATAAGHIDAAI---QMMMVLGALAAV-GGIALAYWITHSITKPLHEAVKIAQTVAAGDL 233 Query: 232 SRRVALDRNDEFGVLGSGFDRMTDELAALVSQAQKSSARVATSVTEIAATARQQQATAAE 291 + + DE G L M L +V + + S+ +A + T+IA+ + E Sbjct: 234 TSVIEAKYKDETGQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSRTEE 293 Query: 292 TAATTTEIGATSREIHATSR---DLVRTMNEVSVVSEQTSALAGNGQAGLTRMGETMHNV 348 A++ E ++ E+ T R D R N++++ + S++A G G+ + V Sbjct: 294 QASSLEETASSMEELTGTVRQNADNARQANQLALTA---SSVASKG-------GDVVSQV 343 Query: 349 MDAAGSVSAKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVA 408 +D GS+ N+ A I ++ I +A QTN+L+LNAA+EA +AGE GRGF+VVA Sbjct: 344 VDTMGSI-------NDSAKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 396 Query: 409 TEIRRLADQTAVATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRAMQDVQTAGSQLSQII 468 E+R LA ++A A +I+ ++ + V AG R + D AGS + +++ Sbjct: 397 GEVRSLAQRSAAAAKEIKTLIGDSVQKVNAG-----------SRLVDD---AGSTMQEVV 442 Query: 469 AQVQALAPRFQIVNEGMQAQANSAEQINQALVQLSEAAQQ 508 A V+ + + Q Q EQINQA++Q+ QQ Sbjct: 443 ASVRRVTDIMGEITAASQEQTTGIEQINQAVIQMDSVTQQ 482 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 139/554 (25%), Positives = 262/554 (47%), Gaps = 58/554 (10%) Query: 1 MKNWTIKQRLLGSFGLILLLMALMAGISALNLGRIDKSATALRRDSTPG--LYHSTQIN- 57 + N I+Q+L SFG++ L+ ++ +S + LG+++ S + +D P L +S QI Sbjct: 4 IANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEV 63 Query: 58 ---AAWYENLLLTQQIAQIDTNDAERQANLALLRRNAERLDKLQEDYDQTIFSDTDRNLF 114 A +++L+ A+I ++ QA+ + E+L + + ++ D Sbjct: 64 NKIALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQ-------TEEDNRYV 116 Query: 115 EQFKQVRQRYRALVGEVLKMDFSQRPPIDKLFNEQIRPQWRAGYQLT-QRMVDTNKAIAD 173 R +Y +L++ + K + +Q+ + Y + M D ++ + Sbjct: 117 SAAIVARDQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMN 176 Query: 174 KAASRINEAVTAAQFAMMTALMA--ALLAAMVCGFFLLRAINEPLQKLMGILDVMRSGDF 231 A + T+ Q + ++A +LL ++ G+++ R+I PL +G+ + GD Sbjct: 177 VAGDA--ASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDL 234 Query: 232 SRRVALDRNDEFGVLGSGFDRMTDELAALVSQAQKSSARVATSVTEIA------ATARQQ 285 S V + +E G L + M D L +V+Q + + +A + EIA ++ +Q Sbjct: 235 SGPVFVKTTNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQ 294 Query: 286 QATAAETAATTTEIGATSREIHATSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMGETM 345 QA++ E A+ E +L T+ E + ++Q + LA + + G + Sbjct: 295 QASSLEETASAME-------------ELTSTVRENADNAQQANQLAASATKVARQGGSVV 341 Query: 346 HNVMDAAGSVSAKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFS 405 H V+ A +A +N + I + I +A QTN+L+LNAA+EA +AGE GRGF+ Sbjct: 342 HEVI-------ATMAAINTSSKKIADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFA 394 Query: 406 VVATEIRRLADQTAVATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRAMQDVQTAGSQLS 465 VVA+E+R LA ++A A +I+ ++ D +V + VQ AG + Sbjct: 395 VVASEVRNLAQRSATAAMEIKALI--------------DDSVAKVDNGSKLVQQAGLTID 440 Query: 466 QIIAQVQALAPRFQIVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELNV 525 +++ V +L+ ++ Q Q+ EQ+ QA+VQ+ E QQ ++QS+ A + L Sbjct: 441 EVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQIDEGTQQNAALVEQSAAAAQSLRE 500 Query: 526 VSNELRNGVSRFKV 539 +++L VS FK+ Sbjct: 501 QADQLMQLVSIFKL 514 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 141 bits (356), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 145/551 (26%), Positives = 250/551 (45%), Gaps = 50/551 (9%) Query: 1 MKNWTIKQRLLGSFGLILLLMALMAGISALNLGRIDKSATALRRDSTPGLYHSTQINAAW 60 + N I RL +F +ILLLMA M + L + ++ + + H ++ W Sbjct: 3 ISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEEAA-----HKERLTHEW 57 Query: 61 Y----ENLLLTQQIAQIDTNDAERQANL-ALLRRNAERLDKLQEDYDQTIFSDTDRNLFE 115 Y N + T A+I +NDAE Q + ++ + KLQ + I S+ + L Sbjct: 58 YLGNVANAIRTA--ARIRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKLMS 115 Query: 116 QFKQVRQRYRALVGEVLKMDFSQRPPI----DKLFNEQIRPQWRAGYQLTQRMVDTNKAI 171 + R Y + +V K+ KL ++ P A + Q +V + I Sbjct: 116 VVGEKRTAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQVI 175 Query: 172 ADKAASRINEAVTAAQFAMMTALMAALLAAMVCGFFLLRAINEPLQKLMGILDVMRSGDF 231 +A + ++ + + ++T AL+ + + L R+I PL + + + SGD Sbjct: 176 FQRAKADVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVASGDL 235 Query: 232 SRRVALDRNDEFGVLGSGFDRMTDELAALVSQAQKSSARVATSVTEIAATARQQQATAAE 291 ++ NDE G L M D L VSQ + +AT+ +IAA + E Sbjct: 236 RNKIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEE 295 Query: 292 TAATTTEIGATSREIHATSR---DLVRTMNEVSVVSEQTSALAGNGQAGLTRMGETMHNV 348 A++ E ++ E+ +T + D R N+++V S +A G ++R+ +TM + Sbjct: 296 QASSLEETASSMEELTSTVKQNADNARQANQLAV---SASGVAEKGGEVVSRVVDTMEQI 352 Query: 349 MDAAGSVSAKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVA 408 N A I ++ I +A QTN+L+LNAA+EA +AGE GRGF+VVA Sbjct: 353 --------------NASAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 398 Query: 409 TEIRRLADQTAVATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRAMQDVQTAGSQLSQII 468 +E+R LA ++A A KEI++ + V D+V + V AG + +++ Sbjct: 399 SEVRNLAQRSAAAA-------KEIKTLIGDSV-------DKVELGSKLVGEAGVTMDEVV 444 Query: 469 AQVQALAPRFQIVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELNVVSN 528 V+ + + Q Q+ EQ+NQA+ Q+ + QQ +++++ A E LN + Sbjct: 445 QSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAA 504 Query: 529 ELRNGVSRFKV 539 +L VS FK+ Sbjct: 505 KLAEAVSVFKL 515 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.127 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 866,288 Number of extensions: 28094 Number of successful extensions: 271 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 21 Length of query: 541 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 453 Effective length of database: 895,685 Effective search space: 405745305 Effective search space used: 405745305 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)