BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2989.p
         (155 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981925|ref|YP_001351707.1| CheW purine-binding chemotaxis ...   173   4e-45

>gi|152981925|ref|YP_001351707.1| CheW purine-binding chemotaxis
           protein [Janthinobacterium sp. Marseille]
          Length = 161

 Score =  173 bits (439), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 115/151 (76%)

Query: 5   LFLLFSLGDERYALPTAEVAMVLPLSPCKALPGTPAWVAGLLPHGERHVPVIDLSMLALG 64
           LFLLF +G +RYAL  A+VA+VLPL+  K +PGTPAWV GL  +  +HVPV+D+S+LA G
Sbjct: 10  LFLLFQIGRDRYALEAAQVALVLPLARLKEVPGTPAWVLGLFNYDGQHVPVLDVSLLATG 69

Query: 65  RAAPARVSTRLVLVHYRAGLSTPVLLGLLLERATETLRADPAHFTSAAIRNEGAPYLGPV 124
           +AA +R+STRLVLVHY      P LLGL++E+AT+TLR DPA+F+ + + N+ A YLGPV
Sbjct: 70  QAAASRLSTRLVLVHYTPAGQAPQLLGLVVEKATDTLRCDPANFSDSGLSNQDARYLGPV 129

Query: 125 MPYQGGLLQRVQVDDLLDPATRALLYPEALA 155
           +    GL+QR+ V DLLD + +ALL+PE ++
Sbjct: 130 LRRDDGLIQRINVQDLLDASVQALLFPEVVS 160


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 341,471
Number of extensions: 12508
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 79
Effective length of database: 940,049
Effective search space: 74263871
Effective search space used: 74263871
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)