BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2988.p
         (419 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980502|ref|YP_001351706.1| CheR chemotaxis protein methylt...   395   e-111
gi|152979933|ref|YP_001353783.1| CheR chemotaxis protein methylt...    86   4e-18

>gi|152980502|ref|YP_001351706.1| CheR chemotaxis protein
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 424

 Score =  395 bits (1016), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/414 (52%), Positives = 277/414 (66%), Gaps = 5/414 (1%)

Query: 1   MKTLPHIAELLKAAMGLDMATVGSSLIERVVRERMAALEITDDSLYLAVLQTSEAQLQAL 60
           M TL  IA LL+ +MGLD+A+VG  LIER V ERM  L +T D+ YL  LQ++  +LQ L
Sbjct: 1   MTTLNRIASLLRHSMGLDVASVGMMLIERAVSERMLTLGMTQDA-YLLALQSAPGELQEL 59

Query: 61  IESAVVPETWFFRDREAIFATARLARQRLAEQPAVPVRILSLPCSTGEEPYSLAMALQEE 120
           IE  +VPETWFFRDREAI + AR+ARQ++AE+P   VR+LSLPCSTGEEPYS+AMAL + 
Sbjct: 60  IELVIVPETWFFRDREAILSLARMARQQIAEKPDRCVRVLSLPCSTGEEPYSVAMALLDA 119

Query: 121 GVAPTQFVIDAYDIRTRSLEIAAAGVYGRNSFRGQDLGFRDRHFTPHEQGWQLQQEIRQQ 180
           GV    F IDA DI  RSL IA  GVYGRNSFRG+ L +RDRHF   +   +L + +RQQ
Sbjct: 120 GVPSVNFHIDAIDICHRSLAIAERGVYGRNSFRGKLLDYRDRHFDTSKDEARLSELVRQQ 179

Query: 181 VRFAPGNLLAPDFLRQAAPYDFIFCRNVLIYFEREVQQQVVDLLESLMKPDALVFVGPAE 240
           V F  GN+ A DFL    PYDF+FCRNVLIYF+RE+QQQ V++L+ L+ P   +FVGPAE
Sbjct: 180 VNFRHGNMFAGDFLLNEKPYDFVFCRNVLIYFDREMQQQAVEVLDRLLHPQGTIFVGPAE 239

Query: 241 GGILLSPRMESAGIALAFGFRKRSSPLRPSRLPAWITPP---QVISAAPSTVCGAPRTGL 297
            G++L P + SAGI LAF FRKR+ P  P+ +   I  P   Q+    P+T    P   +
Sbjct: 240 AGVMLRPNLVSAGIPLAFAFRKRNGP-HPTAVARKIIAPAPIQIKPLPPATPVRKPFANV 298

Query: 298 TAVTTRPAMPQPTATAPTLLQQARVLADQGQFTQAEALCEQVMVEQGPSAEAFYLQGLIH 357
                  A P    +  TLL +A   A+QG+  +A+ALC++ + + GP+A A+YL GLI 
Sbjct: 299 VPPVVPIATPVAAPSGETLLTRAMQCANQGELAEADALCKEHVQQNGPNAAAYYLMGLIS 358

Query: 358 DASGQDELAQRSYRKALYLQPQHQAALLQLAALLQAQGDAAGAERMRQRAARVS 411
           DA      A + YRK +YLQP H  AL  LAALL AQGD AGA+ M+QRA RV+
Sbjct: 359 DARQDSGEALQFYRKTIYLQPNHYEALTHLAALLAAQGDTAGAQLMQQRAQRVA 412


>gi|152979933|ref|YP_001353783.1| CheR chemotaxis protein
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 292

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 117/255 (45%), Gaps = 19/255 (7%)

Query: 2   KTLPHIAELLKAAMGLDMATVGSSLIERVVRERMAALEITDDSLYLAVLQT--SEAQLQA 59
           +    +  L+    G+ +A     ++   +  R+ A  I     YL  L+   S+ + +A
Sbjct: 20  RDFERVRALIHKKAGIALAESKQEMVYSRLARRLRATGIGSFVSYLDQLEQGGSDEEWEA 79

Query: 60  LIESAVVPETWFFRDREAIFATARLARQRLAEQPAVPVRILSLPCSTGEEPYSLAMALQE 119
              +     T FFR+    F       +++ E    P+ I     STGEEPYS+AM   E
Sbjct: 80  FTNALTTNLTSFFREAHH-FPILADHIKKIKE----PIEIWCSAASTGEEPYSIAMTACE 134

Query: 120 --EGVAPTQFVIDAYDIRTRSLEIAAAGVYGRNSF------RGQDLGFRDRHFTPHEQGW 171
               + P   +I A DI T  L   A GVY  +        R +    R +     E   
Sbjct: 135 AFNTLTPPVRII-ATDIDTNVLNTGANGVYSIDRLDKMSPERAKRFFLRGK--GAREGMV 191

Query: 172 QLQQEIRQQVRFAPGNLLAPDFLRQAAPYDFIFCRNVLIYFEREVQQQVVDLLESLMKPD 231
           +++ E+RQ + F   NLL  ++   +  +D IFCRNV+IYF++  Q +++D    LMKPD
Sbjct: 192 RVRPELRQMITFKQVNLLESNW-GISGQFDAIFCRNVMIYFDKPTQGKILDRFAPLMKPD 250

Query: 232 ALVFVGPAEGGILLS 246
            L+F G +E  + ++
Sbjct: 251 GLLFAGHSENFLYVT 265


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 793,510
Number of extensions: 27892
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 419
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 333
Effective length of database: 903,079
Effective search space: 300725307
Effective search space used: 300725307
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)