BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2987.p
         (223 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981926|ref|YP_001351705.1| CheW purine-binding chemotaxis ...   201   4e-53

>gi|152981926|ref|YP_001351705.1| CheW purine-binding chemotaxis
           protein [Janthinobacterium sp. Marseille]
          Length = 213

 Score =  201 bits (510), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 103/214 (48%), Positives = 139/214 (64%), Gaps = 6/214 (2%)

Query: 12  HLDNCWSRIGIRGEGSCPELAQYVRCLNCPTFARAALQQLDRVDASPEVAQQWVQASAHA 71
            +D+CW+RIG+RG+ +CP+L  Y RCLNCPT+A AA   LDR  +  ++   W Q+    
Sbjct: 4   KIDDCWNRIGVRGDNTCPKLQDYFRCLNCPTYAAAASTLLDRPTSDADLISDWGQSK--- 60

Query: 72  QLQGQGTHALDSALVVRIAGEWLAIATAVVQEVAEARPVHSLPHQRNTAITGVLNIRGVL 131
           Q   +   A+ SAL+ R   EWLA+ T  + EVAE R +HSLPHQ N AI G+ N+RG L
Sbjct: 61  QSLARSETAV-SALIFRAGIEWLALPTDAIVEVAEQRTIHSLPHQTNRAILGLSNVRGSL 119

Query: 132 RICVSLAQLF--QLPTQSRAPYLLVALHEGQTLVFPVEEVAGVHRYAPDTLAAVPTTLAQ 189
            +CVSL Q+   +  T +    LLV  H+GQ+LVFPV+EV GV R+    L AVP+T+AQ
Sbjct: 120 LLCVSLTQMLGAERGTAAAIQRLLVVAHQGQSLVFPVDEVLGVQRFTQAELQAVPSTVAQ 179

Query: 190 ASIQYTRGMVEWRGHPIGLLDHELLFYVLNRSMT 223
           ++  YT+ M+  +   IGLLD  LLFY LNRS+T
Sbjct: 180 SNTTYTQAMIVSKDKKIGLLDCGLLFYALNRSLT 213


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 520,717
Number of extensions: 20152
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 143
Effective length of database: 925,261
Effective search space: 132312323
Effective search space used: 132312323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)