BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2986.p (763 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthi... 1015 0.0 gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and... 253 4e-68 gi|152980691|ref|YP_001353785.1| CheA chemotaxis protein [Janthi... 198 9e-52 gi|152980198|ref|YP_001352775.1| CheA chemotaxis protein [Janthi... 192 8e-50 gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthi... 93 7e-20 >gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 756 Score = 1015 bits (2624), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/761 (69%), Positives = 610/761 (80%), Gaps = 5/761 (0%) Query: 1 MSTPDLSQMSMLDLFRFEAESQIAQLNTSLLALEQKPDAAEHLEACMRAGHSLKGAARIV 60 MS+PDLSQMSML+LFR EAESQ L+ LL LEQ P +A+ LEACMRA HSLKGAARI+ Sbjct: 1 MSSPDLSQMSMLELFRQEAESQTHVLSIGLLELEQNPRSADQLEACMRAAHSLKGAARII 60 Query: 61 GLDTAVKVAHVLEDCFVLAQRGQLRLEKKHIDVLLRGADLLGRIAAPPDGDEAWADHAGS 120 GL V VAHV+EDCFVLA+RG+L L +K IDVLL G DLL RIA PP+ DE+W DHAG Sbjct: 61 GLAAGVDVAHVMEDCFVLARRGELLLHRKQIDVLLTGVDLLTRIANPPNNDESWGDHAGK 120 Query: 121 AEVQAFLLALPAVMSGGEAAPWPVPAAVGPATPELNAEVTPAPTSSPASPLSGEAVALAA 180 E+ AF+ L M+ + A A L E P S+ A ++ EA + Sbjct: 121 PEITAFIAKLTTAMADPDGGDSSADTATDNAAGNLAVEAESQPISNGA--MASEA--RES 176 Query: 181 ASRAVRVSADSLDRLLGLSGEALVESRRLKPFSANMLRMKRGQREAMQALDLLQHQLSSN 240 R+VRV+A +LDRLL LSGE+LVESRRLKPF+A++LR+KR QREA QALDLL +LS+ Sbjct: 177 NIRSVRVNAKNLDRLLSLSGESLVESRRLKPFTASILRLKRTQREAGQALDLLHQKLSAQ 236 Query: 241 QFDELTHATLNELRSLMQQNQQLLGEQLNALDAFDRRSLNLSQRLYDEALACRMRPFADG 300 DE T A L+E+R+LM Q Q ++ +QL L+ FDRRS+NLSQRLYDEALACRMRPFADG Sbjct: 237 TADEATQAALSEVRTLMMQCQHMVADQLGELETFDRRSVNLSQRLYDEALACRMRPFADG 296 Query: 301 TGGFARMVRDVAHMLGKSVRLDISGNDTQIDRDILEKLEAPIGHLLRNALDHGIEEAATR 360 T G+ARMVRDV H LGKSVRL+I GN TQIDRDILEKLEAPIGHLLRNA+DHGIE R Sbjct: 297 THGYARMVRDVGHALGKSVRLEIIGNATQIDRDILEKLEAPIGHLLRNAIDHGIENPQQR 356 Query: 361 RAAGKPEQGVIRLEARHSAGMLLIEVADDGAGIDLARLRQAVVARGLSNQETVERLSESE 420 +AAGKPEQG+I LEARHSAGMLL+ V+DDGAGIDL +LR ++ R LSN +TV +LSE+E Sbjct: 357 KAAGKPEQGLITLEARHSAGMLLVNVSDDGAGIDLDQLRATIIERKLSNADTVAQLSEAE 416 Query: 421 LLDFLLLPSFSLRDTVTEISGRGVGLDVVADMLKQVRGTIRISTRAGQGSRFLLQLPLTL 480 LL+FLLLPSFSLRDTVT+ISGRGVGLDVV+DMLKQVRGTIRIS+ QG+RF +QLPLTL Sbjct: 417 LLEFLLLPSFSLRDTVTDISGRGVGLDVVSDMLKQVRGTIRISSTPQQGTRFQMQLPLTL 476 Query: 481 SVIRSLLVDIGGEPYAFPLAYVNRTLRLPAEALQTLEGYQHFHHEGRQVGLISAHQVLHK 540 SVIRSLLV I EPYAFPLAYVNRTL L + L LEG QHF +GRQ+GL+SAHQ+L K Sbjct: 477 SVIRSLLVTINEEPYAFPLAYVNRTLELRRDQLAMLEGQQHFTFDGRQIGLVSAHQILQK 536 Query: 541 GQWRVRDGSVCVVVIGEQERSYGVAVDAFLGERTLVVQPLDARLGKIPDILAGALMEDGA 600 G+ R +D V VVVIG+ E +YG+AVD FLGER LVVQPLD RLGK+P++LAGALMEDG Sbjct: 537 GELRAKDDLVSVVVIGDHEHTYGLAVDDFLGERMLVVQPLDNRLGKVPNVLAGALMEDGD 596 Query: 601 PLLILDVADLLRTVEKLTSSGRLQTVDQEGSSPATVVARKKVLVVDDSLTVRELERKLLT 660 P+LILDVAD++R+VEKLT++G+L V Q G V RKKVLVVDDSLTVRELERKLL+ Sbjct: 597 PVLILDVADMVRSVEKLTAAGKLDVV-QHGGKNLNDVKRKKVLVVDDSLTVRELERKLLS 655 Query: 661 HRGYQVTVAVDGMDGWNAVRAEHFDLVITDIDMPRMDGIELVSLIRGAPQWQSLPVMIVS 720 + GYQV VAVDGMDGWNAVR EHFDLVITDIDMPRMDGIELVSLIR A QSLPVMIVS Sbjct: 656 NCGYQVVVAVDGMDGWNAVRTEHFDLVITDIDMPRMDGIELVSLIRQAANLQSLPVMIVS 715 Query: 721 YKDREEDRQRGLAAGADHYFTKSSFHDESLLRAVTDLIGEA 761 YKDREEDRQRGL AGAD+YFTKSSFHDESLL+AV DLIG A Sbjct: 716 YKDREEDRQRGLDAGADYYFTKSSFHDESLLQAVVDLIGAA 756 >gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 1901 Score = 253 bits (645), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 189/623 (30%), Positives = 312/623 (50%), Gaps = 48/623 (7%) Query: 185 VRVSADSLDRLLGLSGEALVESRRLKP-----------FSANMLRMKRGQRE-AMQALDL 232 VRV AD LDRL+ +GE + +L+ S N++R++ RE MQA Sbjct: 1281 VRVRADILDRLVNQAGEVSISRSKLETEVGTLRQSMGELSENVVRLREQLREIEMQAESQ 1340 Query: 233 LQHQL---SSNQFDELTH---ATLNELRSLMQQNQQLLGE-QLNALDAFDRRSLNLSQR- 284 + ++ + +FD L L EL +M ++ +G Q N D S +L+ + Sbjct: 1341 ITSRMGISADREFDPLEFDRFTRLQELTRMMAESVNDVGSVQQNLSRTIDSASTDLTTQA 1400 Query: 285 -----LYDEALACRMRPFADGTGGFARMVRDVAHMLGKSVRLDISGNDTQIDRDILEKLE 339 L + + RM FA + R+ R + K V LDI G+ +IDR +LEK+ Sbjct: 1401 RLTRDLQQDLMRVRMVQFASISERLFRVTRQASKETDKRVNLDIRGSAVEIDRGVLEKMA 1460 Query: 340 APIGHLLRNALDHGIEEAATRRAAGKPEQGVIRLEARHSAGMLLIEVADDGAGIDLARLR 399 P HLLRNA+ HGIE R+AAGK E G +R+E R ++I +DDG G++L +R Sbjct: 1461 GPFEHLLRNAIVHGIESREKRQAAGKNETGELRIEIRQEGNEVVIHFSDDGQGLNLDNIR 1520 Query: 400 QAVVARGLSNQETVERLSESELLDFLLLPSFSLRDTVTEISGRGVGLDVVADMLKQVRGT 459 ++ GL ++ LS+SE D + P FS + +TE++GRG+G+DVV + G Sbjct: 1521 NKALSSGLLTEDMA--LSDSETTDLIFHPGFSTAEEITELAGRGIGMDVVRSEAASLGGR 1578 Query: 460 IRISTRAGQGSRFLLQLPLTLSVIRSLLVDIGGEPYAFPLAYVNRTLRLPAEALQTLEGY 519 + I++ AG+G+ F + LPLTL+V + +L+ GG+ YA P V + +L L Sbjct: 1579 VAIASEAGKGANFTIHLPLTLAVTQVVLLSTGGKTYAIPSVLVEQVQQLKTGPLAAAYNE 1638 Query: 520 QHFHHEGRQVGLISAHQVLHKGQWR--VRDGSVCVVVIGEQERSYGVAVDAFLGERTLVV 577 + ++V + +L Q + S +++ ER + VD LG R +VV Sbjct: 1639 GAVMWQSQRVPMHYLSSLLGDLQVAPVTQQYSPLLILKSGNER-VALHVDEILGNREVVV 1697 Query: 578 QPLDARLGKIPDILAGALMEDGAPLLILDVADLLR-------TVEKLTSS-------GRL 623 + + +L ++ I ++ G +LIL+ L + +LT S Sbjct: 1698 KNIGPQLSRMIGIAGATVLGSGEIVLILNPVPLAQRAALENIRAPRLTPSDAPDGMGAIA 1757 Query: 624 QTVDQEGSSPATVVARKK---VLVVDDSLTVRELERKLLTHRGYQVTVAVDGMDGWNAVR 680 + VD S A V + V+VVDDSLTVR + ++LLT GYQV +A DG+D ++ Sbjct: 1758 EMVDSNLQSAARVQGLRTQSIVMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQ 1817 Query: 681 AEHFDLVITDIDMPRMDGIELVSLIRGAPQWQSLPVMIVSYKDREEDRQRGLAAGADHYF 740 + D+++ DI+MPRMDG +L IR + + +P+++++ + + R + G + Y Sbjct: 1818 SVTPDVMLVDIEMPRMDGFDLTRNIRDDERTRDIPIIMITSRTASKHRNYAMELGVNEYL 1877 Query: 741 TKSSFHDESLLRAVTDLIGEATS 763 K + ++ LL + + +A + Sbjct: 1878 GK-PYQEDVLLELIAGFVAKAPT 1899 >gi|152980691|ref|YP_001353785.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 712 Score = 198 bits (504), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 136/443 (30%), Positives = 223/443 (50%), Gaps = 53/443 (11%) Query: 178 LAAASRAVRVSADSLDRLLGLSGEALVESRRLKPFSANMLRMKRGQREAMQALDLLQHQL 237 ++A S ++RV + +D+L+ L GE ++ + M+ + G ALD +QH+ Sbjct: 315 VSAESSSIRVGIEKVDQLINLVGELVI--------TQAMIEQRTG------ALDPMQHER 360 Query: 238 SSNQFDELTHATLNELRSLMQQNQQLLGEQLNALDAFDRRSLNLSQRLYDEALACRMRPF 297 N +LT T + L + ++ RM P Sbjct: 361 LLNSVSQLTRNT---------------------------------RDLQEAVMSIRMMPM 387 Query: 298 ADGTGGFARMVRDVAHMLGKSVRLDISGNDTQIDRDILEKLEAPIGHLLRNALDHGIEEA 357 F RMVRD+A LGK V G T++D+ ++E++ P+ HL+RN++DHGIE Sbjct: 388 DYVFSRFPRMVRDLASKLGKKVEFVTHGAATELDKGLIERIVDPLTHLVRNSIDHGIEMP 447 Query: 358 ATRRAAGKPEQGVIRLEARHSAGMLLIEVADDGAGIDLARLRQAVVARGLSNQETVERLS 417 TR AAGK G + L A H G ++IEV+DDG G++ R+ +GL + L Sbjct: 448 DTRVAAGKSASGQLSLSAGHQGGNIIIEVSDDGGGLNRERILAKAKQQGLP---VSDDLP 504 Query: 418 ESELLDFLLLPSFSLRDTVTEISGRGVGLDVVADMLKQVRGTIRISTRAGQGSRFLLQLP 477 + E+ + P FS + VT++SGRGVG+DVV + + G++ I + G G+ L+ LP Sbjct: 505 DEEVWQLIFAPGFSTAEAVTDVSGRGVGMDVVKRNITAMGGSVDIRSSKGYGTTILISLP 564 Query: 478 LTLSVIRSLLVDIGGEPYAFPLAYVNRTLRLPAEALQTLEGY-QHFHHEGRQVGLISAHQ 536 LTL+++ + + +G E Y PL YV +L+ ++ + G Q G + LI ++ Sbjct: 565 LTLAILDGMSIKVGDEIYILPLGYVVESLQPELADIKDISGQGQVIKVRGDYLPLIPLYK 624 Query: 537 VLHKGQWRVRDGSVCVVVIGEQE-RSYGVAVDAFLGERTLVVQPLDARLGKIPDILAGAL 595 + + R D S +VVI E E + + VD +G++ +VV+ L++ K+ I + Sbjct: 625 IFSI-EPRFTDPSEGIVVILESESKKAALFVDDLVGQQQVVVKNLESNYRKVAGISGATI 683 Query: 596 MEDGAPLLILDVADLLRTVEKLT 618 + DG LI+DVA LLR+ +L Sbjct: 684 LGDGGVALIIDVAALLRSSRQLN 706 Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 76/160 (47%), Gaps = 23/160 (14%) Query: 3 TPDLSQMSMLDLFRFEAESQIAQLNTSLLALEQKPDAAEHLEACMRAGHSLKGAARIVGL 62 T D+SQ +F E E +A++ LLA++ E L A RA HS+KG A G+ Sbjct: 2 TIDMSQF--FQVFFDETEELLAEMEKLLLAVDVSAPDEEDLNAIFRAAHSIKGGAATFGI 59 Query: 63 DTAVKVAHVLEDCFVLAQRGQLRLEKKHIDVLLRGADLLG------RIAAPPDGDEAWAD 116 +V HVLE ++G++ L +H+D L D+L R+ P D EA AD Sbjct: 60 TDLTEVTHVLETLLDRIRKGEMALMAEHVDAFLSAKDVLKMQLDGHRLHTPVDL-EAVAD 118 Query: 117 HAGSAEVQAFLLALPAVMSGGEAAP---WPVPAAVGPATP 153 V+ L +L S +AAP PV AAV P P Sbjct: 119 ------VRILLESL----SQDDAAPPQSAPVAAAV-PGIP 147 >gi|152980198|ref|YP_001352775.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 615 Score = 192 bits (487), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 145/439 (33%), Positives = 225/439 (51%), Gaps = 52/439 (11%) Query: 184 AVRVSADSLDRLLGLSGEALVESRRLKPFSANMLRMKRGQREAMQALDLLQHQLSSNQFD 243 ++RV A LD LL ++GE++ + A QA LL+ QF Sbjct: 226 SIRVDAVKLDTLLEVAGESV--------------------QAANQASVLLEKL---AQFP 262 Query: 244 ELTHATLNELRSLMQQNQQLLGEQLNALDAFDRRSLNLSQRLYDEALACRMRPFADGTGG 303 HA +LM L E LN R+ S L LA RM+P Sbjct: 263 VEGHAA-----TLMAA----LAETLN-------RASRYSTELQRATLATRMQPVGKLFQK 306 Query: 304 FARMVRDVAHMLGKSVRLDISGNDTQIDRDILEKLEAPIGHLLRNALDHGIEEAATRRAA 363 F R+VR++A LGK V L I G +T++DR +++ L P+ H+LRN+LDHGIEEAA R + Sbjct: 307 FPRLVRELAKDLGKDVELQIEGAETEVDRVVVDSLYDPLVHMLRNSLDHGIEEAAVRAKS 366 Query: 364 GKPEQGVIRLEARHSAGMLLIEVADDGAGIDLARLRQAVVARGLSNQETVERLSESELLD 423 GKP + I L+A A ++IE++DDG G+D +LR +++GL + + S+ E+L Sbjct: 367 GKPAKSTILLKAWQEASSVMIELSDDGKGMDGQQLRAKAISKGLISDNAAQ--SQEEMLQ 424 Query: 424 FLLLPSFSLRDTVTEISGRGVGLDVVADMLKQVRGTIRISTRAGQGSRFLLQLPLTLSVI 483 + LP FS ++ +SGRGVG+DVV +++ RG I I + G G+RF ++LP+ LS++ Sbjct: 425 LVFLPGFSTKEVANSVSGRGVGMDVVKTAVEKHRGAITIDSVLGAGTRFSIRLPIELSIV 484 Query: 484 RSLLVDIGGEPYAFPLAYVNRTLRLPAEALQTLEGYQHFHHEGRQVGLISAHQVLHKGQW 543 ++LV A P+A V R + LP E + + G +GR + + S L + Sbjct: 485 PTMLVRSSDAALALPMAVVQRVVELP-EEFEQVGGAPVLRDQGRPLPVRSLAGAL---AY 540 Query: 544 RVRDGSVCVVVIGEQERSYGVAVDAFLGERTLVVQPLDARLGKIPDILAGALMEDGAPLL 603 V V +V+ Q Y ++V G LV++P+ A +P I A +G +L Sbjct: 541 EVGVEKVGIVIAAPQ--PYILSVGMVEGTADLVIKPMTAI--TVPGIAGTARSAEGELVL 596 Query: 604 ILDVADLL---RTVEKLTS 619 ++ ++ LL R+ KL + Sbjct: 597 VVGLSFLLEGCRSTPKLAA 615 >gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthinobacterium sp. Marseille] Length = 121 Score = 92.8 bits (229), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 74/120 (61%), Gaps = 1/120 (0%) Query: 640 KKVLVVDDSLTVRELERKLLTHRGYQVTVAVDGMDGWNAVRAEHFDLVITDIDMPRMDGI 699 K +L VDDS ++R++ L GYQVT AVDG DG + + + FDLV+TD +MPRMDG Sbjct: 3 KTILAVDDSGSLRQMVVFSLRAAGYQVTEAVDGQDGLDKAKTQVFDLVLTDQNMPRMDGF 62 Query: 700 ELVSLIRGAPQWQSLPVMIVSYKDREEDRQRGLAAGADHYFTKSSFHDESLLRAVTDLIG 759 L+ +R +Q +P+++++ + +E + +G AAGA+ + K F + L V +IG Sbjct: 63 SLIRALRALSTYQKIPILVLTTESSDEMKAKGRAAGANGWLVK-PFDPQRLTEVVKKVIG 121 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,566,623 Number of extensions: 63602 Number of successful extensions: 340 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 337 Number of HSP's successfully gapped: 24 Length of query: 763 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 672 Effective length of database: 884,594 Effective search space: 594447168 Effective search space used: 594447168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)