BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2984.p (342 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain... 493 e-141 gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [... 168 4e-43 gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 128 4e-31 gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [... 116 2e-27 gi|152982877|ref|YP_001352253.1| hypothetical protein mma_0563 [... 107 8e-25 >gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain-containing protein [Janthinobacterium sp. Marseille] Length = 341 Score = 493 bits (1269), Expect = e-141, Method: Compositional matrix adjust. Identities = 238/342 (69%), Positives = 286/342 (83%), Gaps = 1/342 (0%) Query: 1 MSSDSTSGNLTGIPLLPSDEYKIMVLLVDDQPMVGEAIRRALINEEHIDFHFCTRADEAL 60 M S + S + GI L P++EYKIMVLLVDDQPMVGEAIRRAL+++ +IDFH+C RADEAL Sbjct: 1 MDSSALSDSDLGIHL-PAEEYKIMVLLVDDQPMVGEAIRRALLSDPNIDFHYCARADEAL 59 Query: 61 AVAEKTRPTVILQDLVMPGVDGMTLVRQYRASPVLANVPIIVLSSRDDPEIKRDAFAGGA 120 VAEKT+PTVILQDLVMPGVDG+TLVRQYR + + ++PIIVLS+R+D E+KRDAFA G Sbjct: 60 RVAEKTKPTVILQDLVMPGVDGLTLVRQYRQNAITCDIPIIVLSTREDAEVKRDAFATGV 119 Query: 121 NDYMVKLPDVIELVARLRYHSRSYINLLQRDAAYRALRESQQQLQKTNFELQRLTNTDGL 180 NDYMVKLPD IEL+AR+RYHSRSY NLLQRDAAYRALRESQQQLQK+NFELQRLTNTDGL Sbjct: 120 NDYMVKLPDTIELIARIRYHSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGL 179 Query: 181 TGIANRRYFDDYLSAEWRRARRDAVPLSLLLIDVDFFKRYNDNYGHVAGDTVLRRVAQII 240 TGIANRRYFDDYLSAEW+RARR+ LS+LLIDVD FK YND YGHVAGD VL++VA+ + Sbjct: 180 TGIANRRYFDDYLSAEWKRARREQQELSILLIDVDNFKLYNDTYGHVAGDLVLKQVAKSL 239 Query: 241 DDTIQRPADLAARFGGEEFAMILPRTPIEGAHSLGLKLCQCIEANQVPHERSDISAWLTV 300 + + RPADL+ARFGGEEFA+ILP T GA G K+C +EA ++PH + I WLTV Sbjct: 240 EASAMRPADLSARFGGEEFAIILPATGSNGAVISGKKVCAAVEALRIPHAHAAIGEWLTV 299 Query: 301 SIGAACVIPGQEQDISELIEMADRRLYLAKQQGRNRVVWQDG 342 S+GAA + P EQ ++LIE+AD+RLY AK+ G++RV+W+D Sbjct: 300 SVGAATITPQAEQVPNDLIELADKRLYRAKELGKHRVIWEDA 341 >gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [Janthinobacterium sp. Marseille] Length = 313 Score = 168 bits (425), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 81/178 (45%), Positives = 116/178 (65%) Query: 158 RESQQQLQKTNFELQRLTNTDGLTGIANRRYFDDYLSAEWRRARRDAVPLSLLLIDVDFF 217 ++++ +L EL+ L+ DGLTG+ANRR FD L EW A PLS++L+D+D+F Sbjct: 130 KKTEAKLIDLQKELETLSFKDGLTGVANRRMFDSVLELEWANAMNSKRPLSIILLDIDYF 189 Query: 218 KRYNDNYGHVAGDTVLRRVAQIIDDTIQRPADLAARFGGEEFAMILPRTPIEGAHSLGLK 277 K+YND+YGH+ GD L++VA+ +++ R D RFGGEEF +ILP T + A ++ + Sbjct: 190 KQYNDHYGHIQGDHCLKQVAKTLNNAAIRQRDFFGRFGGEEFILILPETNEKSALTVAER 249 Query: 278 LCQCIEANQVPHERSDISAWLTVSIGAACVIPGQEQDISELIEMADRRLYLAKQQGRN 335 I Q+PHE+S +S LT+S+G VIP + + IE ADRRLYLAKQ+GRN Sbjct: 250 CRMLIFKEQIPHEKSAVSQLLTISLGVHTVIPSYGDEALKFIEEADRRLYLAKQKGRN 307 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 128 bits (322), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 72/183 (39%), Positives = 108/183 (59%), Gaps = 4/183 (2%) Query: 155 RALRESQQQLQKTNFELQRLTNTDGLTGIANRRYFDDYLSAEWRRARRDAVPLSLLLIDV 214 R + E +L+K E +RL+ D LTG NRRYF++ + E+ + RR PLS++ D+ Sbjct: 425 RIVSERTAELRKARDEAERLSRVDALTGAFNRRYFNEVAALEFAKVRRLHQPLSVISFDI 484 Query: 215 DFFKRYNDNYGHVAGDTVLRRVAQIIDDTIQRPADLAARFGGEEFAMILPRTPIEGAHSL 274 D FK+ NDNYGH AGD V++ A++ + + R D AR GGEEFA++LP + IE A + Sbjct: 485 DLFKQINDNYGHAAGDEVIKAAARVSRNAV-REIDFVARIGGEEFAILLPGSTIEQAAAT 543 Query: 275 GLKLCQCIEANQVPHERSDISAWLTVSIGAACVIPGQEQDISELIEMADRRLYLAKQQGR 334 +L + + A QV ++ ++ T S G A + +Q L++ AD +Y AK GR Sbjct: 544 AERLRELVIAEQVSYQGKLLA--FTASFGVAQ-LKDSDQSFEALLQRADEMMYRAKNLGR 600 Query: 335 NRV 337 NRV Sbjct: 601 NRV 603 >gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [Janthinobacterium sp. Marseille] Length = 528 Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 69/176 (39%), Positives = 99/176 (56%), Gaps = 10/176 (5%) Query: 168 NFELQ-----RLTNTDGLTGIANRRYFDDYLSAEWRRARRDAVPLSLLLIDVDFFKRYND 222 N ELQ L D LTG NRR DD L E RA R A PL + ++D+D FK+ ND Sbjct: 355 NLELQLEQMSELVREDQLTGSLNRRGLDDVLEREIARADRRASPLCIAMLDLDDFKKIND 414 Query: 223 NYGHVAGDTVLRRVAQIIDDTIQRPADLAARFGGEEFAMILPRTPIEGAHSLGLKLCQCI 282 YGH+AGD L + ++I DT+ R D+ ARFGGEEF ++LP TP+E A +L + + Sbjct: 415 KYGHMAGDEALIHLVRVIKDTL-RTMDVIARFGGEEFLIVLPDTPLEEAILTITRLQREL 473 Query: 283 EANQVPHERSDISAWLTVSIGAACVIPGQEQDISELIEMADRRLYLAKQQGRNRVV 338 H + L ++ A + + +D + +++ AD LY AK+ G+NRV+ Sbjct: 474 TKQIFMHNHT----RLLMTFSAGVALRKEREDQAAMVKRADIALYEAKKAGKNRVI 525 >gi|152982877|ref|YP_001352253.1| hypothetical protein mma_0563 [Janthinobacterium sp. Marseille] Length = 321 Score = 107 bits (268), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 76/195 (38%), Positives = 108/195 (55%), Gaps = 8/195 (4%) Query: 146 NLLQRDAAYRALRESQQQL---QKTNFELQRLTNTDGLTGIANRRYFDDYLSAEWRRARR 202 NLL R ++R LR + QL +K ++L+ DGLT + NR + +D LS A Sbjct: 130 NLL-RQLSFR-LRAANAQLRRREKVGEFYRQLSMVDGLTNLHNRAWLNDKLSVLVEEAHA 187 Query: 203 DAVPLSLLLIDVDFFKRYNDNYGHVAGDTVLRRVAQIIDDTIQRPADLAARFGGEEFAMI 262 PLSL++ID+D FKR+ND YGH+ GDT LR A ++ + RP+D A R+GGEE +I Sbjct: 188 GKRPLSLIMIDLDHFKRFNDEYGHLLGDTALRTAAGVLSAAL-RPSDFAVRYGGEELIVI 246 Query: 263 LPRTPIEGAHSLGLKLCQCIEANQVPHERSDISAWLTVSIGAACVIPGQEQDISELIEMA 322 LP + + +LC+ + V + +T S G A + P +QD L+ A Sbjct: 247 LPDSNGAAGTMVAQRLCERMRLAVVFADMHMPLPHITASFGVAMLAP--QQDADGLLAAA 304 Query: 323 DRRLYLAKQQGRNRV 337 D LY AKQ GRN+V Sbjct: 305 DAALYRAKQAGRNQV 319 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 807,719 Number of extensions: 32798 Number of successful extensions: 233 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 34 Length of query: 342 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 258 Effective length of database: 910,473 Effective search space: 234902034 Effective search space used: 234902034 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)