BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2982.p (633 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 154 2e-38 gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [... 149 7e-37 gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [... 126 4e-30 gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [... 122 8e-29 gi|152981463|ref|YP_001352343.1| signal transduction protein [Ja... 121 1e-28 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 130/403 (32%), Positives = 195/403 (48%), Gaps = 15/403 (3%) Query: 230 YYSRGWKAILGYEDWELSSHLEDAYQRI-HPEDLPYVQETIRQHFTSQSDTYQVEHRIRC 288 + S G A+ GY + +L + +Y +I HP+D +V++TI + + + +E+RI Sbjct: 43 FVSEGCFALTGYTEEDLLFNSRVSYDQITHPDDRRHVRDTILEAVRNNR-RFDIEYRIVR 101 Query: 289 RDGGYKWISSRGKVVARDAAGNALRMIGTTTDITEVKQLTEKLAKSSRML-DYLTSEIPG 347 DG + + RG ++ D + + G D+TE KQ E L ++ R + I G Sbjct: 102 ADGSIRHVWERGTNISHDNKAWDI-LEGFIQDVTERKQADEALREAERRYRSIFENAIEG 160 Query: 348 MVFQYRVPPRSHGFFTYISEGARETYGLTS-QQLLENPTLIDTIIHPEDLPMFQAARQAV 406 + Y+ P S G+ AR YG S Q L+ ID ++ + + R + Sbjct: 161 I---YQSTP-SDGYLAVNPALAR-MYGYDSPQALISTLRDIDNQVYVDPQRRLEFKR-LM 214 Query: 407 LDGGSHWMLEFRVIPPGQGVRWLRGQARPRRLEDGTTLW-HGFVSDISQSKAFELELQEL 465 G E RV V W+ AR DGT L+ G V I++ K E E+Q Sbjct: 215 AKHGVVTNFESRVHRRNGEVIWISENARSVYNSDGTLLFFEGTVEAITERKLHEAEIQFQ 274 Query: 466 ALTDHLTQLPNRRSFMQRLQEEYSRVQR-GVIEGAAVLMCDLDHFKRVNDSLGHAVGDQV 524 A D LT LPNR R+Q+ +R G + A L DLD FK +NDSLGH VGD++ Sbjct: 275 ATHDALTGLPNRTLLYDRMQQAVLHSERYGKLTAIAFL--DLDQFKFINDSLGHQVGDEL 332 Query: 525 LSHFAALLKGQLRKSDAVGRLGGEEFAVILSRANRQAAAEFALRLQTSFASHPLLHEGGE 584 L A L LR+SD V R GG+EF ++L+ + A ++ S P E Sbjct: 333 LKITAQRLTSCLRESDTVARQGGDEFVLLLTDQPNEEAITHTMQRVLHEVSQPWKANDLE 392 Query: 585 VEVTISIGIALMQADSSGPEQVLRASDDALYRAKEKGRNRFEF 627 ++T SIG+ L D E +L+ +D A+Y+AKE GRN F++ Sbjct: 393 FQITCSIGLTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQY 435 >gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille] Length = 876 Score = 149 bits (375), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 117/394 (29%), Positives = 185/394 (46%), Gaps = 43/394 (10%) Query: 257 IHPEDLPYVQETIRQHFTSQSDTYQVEHRIRCRDGGYKWISSRGKVVARDAAGNALRMIG 316 +H +D ++ +R+ + T HR+R +DG + W+ +RG + DAA N L + Sbjct: 228 LHSDDEAAHKDKLRELRDTPHSTVFSRHRMRHKDGHWIWLETRGYNMLHDAAINGL--VF 285 Query: 317 TTTDITEVKQLTEKLAKSSRMLDYLTSEIPGMVFQYRVPPRSHGFFTYISEGARETYGLT 376 + DIT K+ +KL + + +L + P M++ + G FT ++ ++ +G Sbjct: 286 SIEDITLRKEAEQKLLEETALLRAVLDLNPSMIY----AKDNEGRFTISNQSFQKRFGFD 341 Query: 377 SQQLLENPTLIDTI------------------IHPEDLPMFQAARQAVLDGGSHWMLEFR 418 S+ L T +D I +DL + Q+ Q + D LE R Sbjct: 342 SEDELRGKTALDLCQKIAGSKDELSPEVIADEIQRQDLQVMQSG-QPLQD------LEVR 394 Query: 419 VIPPGQGVRWLRGQARPRRLEDGTTL-WHGFVSDISQSKAFELELQELALTDHLTQLPNR 477 RW P G T+ G DI++ K EL+++ A+ D LT LPNR Sbjct: 395 GFWRQDMDRWFHTSKYPLPDVKGKTIGVLGVTRDITKRKQTELQIEYQAMHDMLTDLPNR 454 Query: 478 RSFMQRLQE--EYSRVQRGVIEGAAVLMCDLDHFKRVNDSLGHAVGDQVLSHFAALLKGQ 535 R + L E SR+++ + +L CDLD FK VND+ GH GDQ L + + Sbjct: 455 RFLVNTLNTAMETSRLRQSSL---TMLFCDLDFFKSVNDTHGHDFGDQCLIEISKRIVTA 511 Query: 536 LRKSDAVGRLGGEEFAVILSRANRQAAAEFALRLQTSFA--SHPLLHEGGEVEVTISIGI 593 L +D V R GG EF ++ + AE ++ T A S L+ + V++ SIGI Sbjct: 512 LPTADFVARFGGNEFVIL----TNSSLAEATIKANTIMAAVSERLIFDNVVVKIQTSIGI 567 Query: 594 ALMQADSSGPEQVLRASDDALYRAKEKGRNRFEF 627 A + A P ++R +D A+Y+AKE+GRNR E Sbjct: 568 AQLNAGHQSPADLIRDADAAMYQAKERGRNRTEI 601 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 126 bits (317), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/171 (45%), Positives = 106/171 (61%), Gaps = 11/171 (6%) Query: 462 LQELALTDHLTQLPNRRSFMQRLQEEYSRVQRGVIEGAAV--LMCDLDHFKRVNDSLGHA 519 LQ + LTD LT + NRR +RL EE R QR G A+ + DLDHFK+VND+ GH Sbjct: 180 LQHIGLTDPLTGVNNRRYVERRLLEEVGRTQR---HGYALSGMYIDLDHFKKVNDNFGHQ 236 Query: 520 VGDQVLSHFAALLKGQLRKSDAVGRLGGEEFAVILSRANRQAAAEFALRLQTSFASHPL- 578 GD+VL A +K +LR SDA+GR GGEEF V+L A AA A R++ S + P+ Sbjct: 237 GGDEVLCEVANRIKAELRLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVSERPIV 296 Query: 579 LHEGGEVEVTISIGIALM-----QADSSGPEQVLRASDDALYRAKEKGRNR 624 L G E+ T+SIG+A + Q ++ +Q+L +D ALY+AK++GRN+ Sbjct: 297 LSSGEELRATVSIGVASLNTADRQDSAAVAQQLLAKADLALYQAKKEGRNK 347 >gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [Janthinobacterium sp. Marseille] Length = 719 Score = 122 bits (305), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 73/183 (39%), Positives = 106/183 (57%), Gaps = 4/183 (2%) Query: 444 LWHGFVSDISQSKAFELELQELALTDHLTQLPNRRSFMQRLQEEYSRVQRGVIEGAAVLM 503 L+ F+ DI++ K + L +AL D LT LPNRR+ +QRL E +R R + + AVL Sbjct: 535 LFIAFLHDITERKLLQASLMGMALKDPLTDLPNRRALIQRLPESIARAAR-LGKPLAVLF 593 Query: 504 CDLDHFKRVNDSLGHAVGDQVLSHFAALLKGQLRKSDAVGRLGGEEFAVILSRANRQA-A 562 DLD FK VND GH GD++L A L G +R +D V RL G+EF ++L N + A Sbjct: 594 LDLDGFKGVNDGYGHEAGDELLRTIAQRLLGAVRTTDTVARLAGDEFVIVLEMLNGDSDA 653 Query: 563 AEFALRLQTSFASHPLLHEGGEVEVTISIGIAL-MQADSSGPEQVLRASDDALYRAKEKG 621 + A ++ + P V ++ SIGIA+ D + PEQ++ +D A+Y AK+KG Sbjct: 654 MDVADKILHTL-QQPFTLTAATVTISASIGIAMHWPEDHTTPEQLITLADGAMYAAKKKG 712 Query: 622 RNR 624 +NR Sbjct: 713 KNR 715 >gi|152981463|ref|YP_001352343.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 457 Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/168 (43%), Positives = 97/168 (57%), Gaps = 2/168 (1%) Query: 461 ELQELALTDHLTQLPNRRSFMQRLQEEYSRVQRGVIEGAAVLMCDLDHFKRVNDSLGHAV 520 ELQ LA D LT LPNRR RL++ + G AV DLD FK VNDSLGHA Sbjct: 291 ELQRLAQYDVLTGLPNRRLLDSRLKKAIAGAN-GHHHLVAVCFLDLDGFKEVNDSLGHAA 349 Query: 521 GDQVLSHFAALLKGQLRKSDAVGRLGGEEFAVILSRANRQAAAEFALRLQTSFASHPLLH 580 GD++L A L+ +R +D + R GG+EF VIL R N E L A P+ Sbjct: 350 GDRLLQQMAQRLQHCMRATDTLARFGGDEFVVILDRLNSIDECEKILERMIHTAQEPVHM 409 Query: 581 EGGEVEVTISIGIALMQADSSGPEQVLRASDDALYRAKEKGRNRFEFA 628 +G EV V+ SIG+A+ Q EQ+L+ +D A+Y+AK+ G+N++ FA Sbjct: 410 DGNEVIVSASIGVAMFQPGVE-REQLLKRADTAMYQAKQLGKNKYVFA 456 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,485,892 Number of extensions: 63323 Number of successful extensions: 261 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 31 Length of query: 633 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 544 Effective length of database: 891,988 Effective search space: 485241472 Effective search space used: 485241472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)