BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2979.p
         (173 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982044|ref|YP_001353074.1| hypothetical protein mma_1384 [...   159   8e-41

>gi|152982044|ref|YP_001353074.1| hypothetical protein mma_1384
           [Janthinobacterium sp. Marseille]
          Length = 155

 Score =  159 bits (402), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 76/138 (55%), Positives = 99/138 (71%), Gaps = 2/138 (1%)

Query: 28  QRLVLDTNVCLDLFVFRDPRWAALQQALEQGRVEAYTREDCRNEWLAVLDYPHLPVTPEN 87
           QR+VLDTNVCLDLFVFRDPRWA L  A++ G+VEA TR+DCR EW  VL YPHL +    
Sbjct: 8   QRIVLDTNVCLDLFVFRDPRWAQLLAAMQNGQVEALTRDDCRKEWSIVLAYPHLKLDEAA 67

Query: 88  KPAICAEFDRLLHCLPLAEVNRFG--LPLCTDRDDQKFLELALQCRAHVLVSKDKAVLKL 145
           +  + AEFD L+ C P+   +     LP+C D+DDQKFLEL+   +A VL++KDKA+LKL
Sbjct: 68  RVQVSAEFDALIRCHPIPATDEAAPRLPVCKDKDDQKFLELSRDVKADVLITKDKALLKL 127

Query: 146 GKRTLKRGLFAIVPPQHW 163
            ++T + GLF I+ P+ W
Sbjct: 128 ARKTRRDGLFEIMTPEAW 145


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.140    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 375,760
Number of extensions: 13385
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 96
Effective length of database: 936,352
Effective search space: 89889792
Effective search space used: 89889792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 126 (53.1 bits)