BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2976.p
         (266 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980898|ref|YP_001353082.1| competence lipoprotein ComL [Ja...   383   e-108

>gi|152980898|ref|YP_001353082.1| competence lipoprotein ComL
           [Janthinobacterium sp. Marseille]
          Length = 261

 Score =  383 bits (983), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 175/262 (66%), Positives = 218/262 (83%), Gaps = 1/262 (0%)

Query: 5   LLKFFIIGFALSLTACGLLPEQKDETVGWSAAKLYSEAKDELNAGGYDKAIKYFEKLESR 64
           +LK  I+  A  L+AC L P++ DET  WS +KLYSEA++E+N G Y KA+ +FEKLESR
Sbjct: 1   MLKITIVALAFLLSACSLTPDKFDETKNWSPSKLYSEAREEMNVGDYAKAVSHFEKLESR 60

Query: 65  YPFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRT 124
           YPFGTYAQQAQM+IAYAYYRQ +Q Q LAAV+RFIKLHP+HPNVDYMYYLRGLINFND+ 
Sbjct: 61  YPFGTYAQQAQMEIAYAYYRQGDQPQALAAVERFIKLHPDHPNVDYMYYLRGLINFNDKV 120

Query: 125 SIFDTFTDQDNTERDPKAMRDAFDSFKLLAERFPESKYTPDAIARMKYLVNAMAQYDVHV 184
           SIFD  + QD TERDPKA R+AFDSFKLL ERFP+SKYTPDA AR+ YLVN MAQYDVHV
Sbjct: 121 SIFDFVSRQDPTERDPKAAREAFDSFKLLTERFPDSKYTPDATARLAYLVNGMAQYDVHV 180

Query: 185 ASYYYRRGAYVSAANRAQAAIKQYPDSPANEEALFILMHSYEALGQTKLKEDTERIIQAT 244
           A+YYYRRGAY++A NRAQ+A+K YP +PA E AL++++ SY+AL   +L++D ER+++  
Sbjct: 181 ANYYYRRGAYLAAVNRAQSAVKNYPGAPAVEGALYVMIRSYDALNLPQLRDDAERVMKTN 240

Query: 245 YPNSPWYHGGPKKKDNPWWKIW 266
           +P+S ++ GGP KKD+PWWK+W
Sbjct: 241 FPDSVYFRGGP-KKDDPWWKVW 261


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 629,930
Number of extensions: 24760
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 184
Effective length of database: 917,867
Effective search space: 168887528
Effective search space used: 168887528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)