BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2974.p
         (248 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981128|ref|YP_001353084.1| hypothetical protein mma_1394 [...   257   4e-70

>gi|152981128|ref|YP_001353084.1| hypothetical protein mma_1394
           [Janthinobacterium sp. Marseille]
          Length = 250

 Score =  257 bits (657), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 155/251 (61%), Positives = 176/251 (70%), Gaps = 4/251 (1%)

Query: 1   MELLIPDW--AAPANIGALTTLRAGGYSPAPYDDGQGGGGLNLGTHVEDDPALVARNRAL 58
           MEL++P W  + PA +GAL T R  G S  PYDDGQGGGGLNLG HV D  A V  NRA 
Sbjct: 1   MELILPQWGISLPA-VGALATTRPCGISATPYDDGQGGGGLNLGVHVGDALANVEHNRAQ 59

Query: 59  LRRLLPAEPAWLTQVHGVNVLDAAALPDDACADACISSTPGAVCVMMTADCLPVLFCDHA 118
           +RR LPAEPAWLTQVHG  VLDAA +     ADA  ++  G VC +MTADCLPVLF D A
Sbjct: 60  IRRQLPAEPAWLTQVHGTTVLDAAQVSGAPEADASFTTQAGVVCAIMTADCLPVLFADTA 119

Query: 119 GTVVGAAHAGWRGLAAGVLEQTVAAMRARGADQIMAWLGPAIGADNFEVGAEVRETFLAQ 178
           G VV AAHAGWRGLAAG+L+ TVA MRA GA  I AWLGPAIG   FEVG +V + F+ +
Sbjct: 120 GRVVAAAHAGWRGLAAGILDNTVAQMRAAGAGTIHAWLGPAIGPQQFEVGEDVLQAFVTK 179

Query: 179 QAQADAAFRPYPGRPGKYLADIYRLARQRLAMVEVRDVSGGGLCTVAD-TRFYSYRRDRT 237
              A  AF+    +PGKYLADIY LAR  LA + V  VSGG  CTV+D  RFYSYRRD  
Sbjct: 180 DPAAATAFKAIADKPGKYLADIYHLARMTLAKLGVTKVSGGNACTVSDPQRFYSYRRDGV 239

Query: 238 TGRMGSLIWLK 248
           TGRM +LIWL+
Sbjct: 240 TGRMAALIWLR 250


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 447,168
Number of extensions: 13204
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 167
Effective length of database: 921,564
Effective search space: 153901188
Effective search space used: 153901188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)