BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2973.p (297 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979818|ref|YP_001353268.1| LysR family transcriptional reg... 168 4e-43 gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 77 2e-15 gi|152981638|ref|YP_001353293.1| LysR family transcriptional reg... 76 2e-15 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 75 6e-15 gi|152981635|ref|YP_001352439.1| MetE/MetH family transcriptiona... 74 1e-14 >gi|152979818|ref|YP_001353268.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 168 bits (425), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 99/286 (34%), Positives = 155/286 (54%) Query: 5 FELSDLRLFLHIVESGSITAGAQRAHMALASASARIRNMEDALGTALLERGRRGVQSTDA 64 F+L DLRL + I ++GS++ A +AL++AS R+R+ E G L +R G+ T A Sbjct: 3 FDLIDLRLLVAIADAGSLSKAAASFPIALSAASNRLRHFEQRSGLTLFQRSAEGMHLTPA 62 Query: 65 GRALAHHARMVAQQMEQMRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLAQHPYT 124 GR + AR V + E ++D L + +RL T A + FLP L FLA +P Sbjct: 63 GRLVLDRARHVLLETENLKDTLRDLTGQRRITLRLAGTTVANSTFLPAALGPFLADYPEI 122 Query: 125 DIELEEKLSYEVVQAVVDGVADIGIIADSTDSGPLQTYPFRQDHLVAVLSRKHPLARRKS 184 D++L E S +V+ AV G ++G++ + + + PFR D LV ++ H LA R S Sbjct: 123 DLQLVEHKSADVLLAVQSGEVEVGVLDGNLATSDVIPLPFRHDKLVLLVPSGHALAERPS 182 Query: 185 LTFSELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVGIAVM 244 + + LG FV L + A+Q+ + A + + L+ RVR SF I ++V Q GIA++ Sbjct: 183 VQLKDALGFAFVCLPPERAMQRFIEEMAVQNSRPLRVRVRAPSFYAIAQLVAEQAGIAML 242 Query: 245 PETAALAGAARMDIRAIPLSDGWSRRQLLICVRGLEGLPGPTRELI 290 PE AAL + + + L D W+ R+L IC+R + L R+L+ Sbjct: 243 PEAAALRHIRELPVHMVALEDAWATRELRICIRAWDTLSTHARQLV 288 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 125/282 (44%), Gaps = 17/282 (6%) Query: 5 FELSDLRLFLHIVESGSITAGAQRAHMALASASARIRNMEDALGTALLERGRRGVQSTDA 64 L LR F+ + E+G T A+ ++ +S S +R++E+ LG L +R R ++ TDA Sbjct: 3 ITLRQLRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELTDA 62 Query: 65 GRALAHHARMVAQQ--------MEQMRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLAR 116 G H VAQ+ +E RD L KG + + + +P++L Sbjct: 63 G----HDLLPVAQKTLMDLLSVVENSRDLLALK----KGRVTIAAGSLHAATVIPDLLKS 114 Query: 117 FLAQHPYTDIELEEKLSYEVVQAVVDGVADIGIIADSTDSGPLQTYPFRQDHLVAVLSRK 176 F ++P + +E+ +V + +V G D+GI + +D ++ ++ Sbjct: 115 FNRRYPGIRVIVEDVAERQVRELIVAGTVDVGIGMTLDGDNSMLAQVIGRDKYAVLMHKE 174 Query: 177 HPLARRKSLTFSELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVE 236 H L R+K++T+ ++ + L S ++ +L H R G L + + MV Sbjct: 175 HQLMRKKTITWQDIAATQPILLKPPSLIRTYLDQHLARVGITLTPAYEVALPWTMTGMVR 234 Query: 237 HQVGIAVMPETAALAGAARMDIRAIPLSDGWSRRQLLICVRG 278 VG+A++ T L A RM + +S R+L + R Sbjct: 235 AGVGVAIV-TTGVLPVAERMGLELRTISAPVIERELAVLTRA 275 >gi|152981638|ref|YP_001353293.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 13/261 (4%) Query: 6 ELSDLRLFLHIVESGSITAGAQRAHMALASASARIRNMEDALGTALLERGRRGVQSTDAG 65 +L LRLF+ + E+GS A A+R H ++ +A I+ +ED +G L+ERG + + AG Sbjct: 2 DLKSLRLFVAVAETGSFVAAAERHHTVQSNVTAHIKKLEDEVGAQLIERGTPA-RPSSAG 60 Query: 66 RALAHHARMVAQQMEQMRDE-LGQYARG-LKGHIRLLCNTSAMTEFLPEVLARFLAQHPY 123 AL + A++M Q DE L + G + G +R+ + LP +L F A HP Sbjct: 61 FALMAY----AERMIQAHDEALALFKNGEVSGSLRVGAMETTTALRLPPLLTLFHASHPE 116 Query: 124 TDIELEEKLSYEVVQAVVDGVADIGIIADSTDSGPLQTYPFRQDHLVAVLSRKHPLARRK 183 D++L + ++V + +G D IA ++ L Y ++ L VL P+ K Sbjct: 117 VDLKLTTGPTAKLVAGLNEGRFDCVFIAGKLENPRLYQYKAYREEL--VLVSASPM---K 171 Query: 184 SLTFSELL-GEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVGIA 242 S+ ++ L F+ + +Q + +G V S D I V +G A Sbjct: 172 SMPSADTLRASTFLVFGQGCSYRQRVDVLLADSGVFSSRMVDFGSLDAILGCVGAGMGYA 231 Query: 243 VMPETAALAGAARMDIRAIPL 263 +MP+ A R I ++ L Sbjct: 232 LMPKVVFDAHKHRFPIYSLKL 252 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 74.7 bits (182), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 97/195 (49%), Gaps = 3/195 (1%) Query: 5 FELSDLRLFLHIVESGSITAGAQRAHMALASASARIRNMEDALGTALLERGRRGVQSTDA 64 +L LR F+ + E G +T AQR + S +IR +E LG L R RG++ T++ Sbjct: 4 IDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTES 63 Query: 65 GRALAHHARMVAQQMEQMRDELGQYARGLKGHIRL-LCNTSAMTEFLPEVLARFLAQHPY 123 G+AL AR++ +Q+ + + + + G G + + ++A+ F+P V+ F + P Sbjct: 64 GQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPG 123 Query: 124 TDIELEEKLSYEVVQAVVDGVADIGIIADSTDSGP-LQTYPFRQDHLVAVLSRKHPLA-R 181 + +EE + E+V+ + D+ I S L+ + ++ L H LA R Sbjct: 124 VIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLAQR 183 Query: 182 RKSLTFSELLGEDFV 196 RKSL + L +DF+ Sbjct: 184 RKSLPLTALAEDDFI 198 >gi|152981635|ref|YP_001352439.1| MetE/MetH family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 303 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/268 (21%), Positives = 122/268 (45%) Query: 10 LRLFLHIVESGSITAGAQRAHMALASASARIRNMEDALGTALLERGRRGVQSTDAGRALA 69 L + L + + GS+T A H+ ++ S ++ +E LGT + R R ++ T AG+ L Sbjct: 7 LAVVLEVEKQGSLTGAANVLHVTQSALSHSMKKLEQQLGTEVWVREGRSLRLTQAGQYLL 66 Query: 70 HHARMVAQQMEQMRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLAQHPYTDIELE 129 A V Q+ + L Q+++G +G +R+ ++L ++++ +L+ P D++++ Sbjct: 67 AVANRVLPQLALAEERLRQFSQGERGALRIGMECHPCYQWLLKIVSPYLSAWPDVDVDVK 126 Query: 130 EKLSYEVVQAVVDGVADIGIIADSTDSGPLQTYPFRQDHLVAVLSRKHPLARRKSLTFSE 189 +K + + A+ D+ + D L+ P V V++R H LA+ K + + Sbjct: 127 QKFQFGGIGALFAYEIDLLVTPDPLYKPGLKFEPVFDYEQVLVVARDHALAKVKYVKPEQ 186 Query: 190 LLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVGIAVMPETAA 249 L+ E + + + AG + + + D + +MV G+A +P Sbjct: 187 LMNEVLITYPVATDRLDVYNQFLLPAGVTPKRHKTIETTDIMLQMVASGRGVAALPRWLV 246 Query: 250 LAGAARMDIRAIPLSDGWSRRQLLICVR 277 A ++D+ + L +Q+ + R Sbjct: 247 QEYAGKVDVVPVRLGPDGIAKQIFLGAR 274 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 655,932 Number of extensions: 26153 Number of successful extensions: 126 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 27 Length of query: 297 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 214 Effective length of database: 914,170 Effective search space: 195632380 Effective search space used: 195632380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)