BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2971.p
         (89 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983239|ref|YP_001353085.1| hypothetical protein mma_1395 [...    90   2e-20

>gi|152983239|ref|YP_001353085.1| hypothetical protein mma_1395
          [Janthinobacterium sp. Marseille]
          Length = 81

 Score = 90.1 bits (222), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 58/74 (78%), Gaps = 2/74 (2%)

Query: 1  MVIVAIAWLYVVFMMSITEQSVIAGVATFLLYGIIPLTIVLYLMGTPQRKRNR--QKMKK 58
          M IVAIAW+YVVFMM+ITE SV+AG+ TFLLYG++P+TI++Y+MGT +RKR R  Q+M++
Sbjct: 1  MYIVAIAWIYVVFMMAITETSVVAGIMTFLLYGVVPVTIIVYVMGTGRRKRKRHAQEMQR 60

Query: 59 SSAIHPQERDDDSS 72
           + I   E    ++
Sbjct: 61 RAQIRESEEAKAAT 74


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 199,295
Number of extensions: 6297
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 89
Length of database: 1,221,021
Length adjustment: 59
Effective length of query: 30
Effective length of database: 1,002,898
Effective search space: 30086940
Effective search space used: 30086940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 122 (51.6 bits)