BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2970.p
         (596 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980974|ref|YP_001353086.1| poly-beta-hydroxybutyrate polym...   709   0.0  

>gi|152980974|ref|YP_001353086.1| poly-beta-hydroxybutyrate
           polymerase [Janthinobacterium sp. Marseille]
          Length = 562

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/527 (62%), Positives = 412/527 (78%), Gaps = 1/527 (0%)

Query: 67  GATLEPADLVRLQQDYTREFGELWQSMLAAKTPAITDRRLSAPAWQEHPYFAFQAAAYQL 126
           G  ++PA   +LQ DY ++F  LWQ ML+A+ P + D+R + PAWQ     AF AAAY L
Sbjct: 35  GMGIDPAVATQLQNDYAQQFMTLWQQMLSAQVPPVADKRFADPAWQSSTMHAFNAAAYLL 94

Query: 127 NSRFLLALADAVKGTEKVRHKLRFAVQQMIDAMSPANFLATNPVAQQKILETRGESLTQG 186
           N++FL A+ADAV+   K + K+RFA++QM++AMSPANFL +NP AQQK++ET+G SLT G
Sbjct: 95  NAKFLAAMADAVQVPPKAKQKIRFAIEQMVNAMSPANFLFSNPEAQQKLIETKGASLTNG 154

Query: 187 IAQLLADVQKGHISQTDETAFEVGRDVGASEGSVIFETELFQLIQYKPLTKTVHAVPLLI 246
           +  L  D+QKG ISQ+DETAFEVGR+V  +EG+V+FE ELFQL+QYKPLT TV+  PLL+
Sbjct: 155 LKHLFEDMQKGRISQSDETAFEVGRNVAITEGAVVFENELFQLLQYKPLTPTVYERPLLL 214

Query: 247 VPPCINKFYILDLQPHNSLVRYTVEQGHTVFLISWRNADAAVETATWDNYVDDAVVRCIH 306
           VPPCINK+YILDLQ HNS VRY VEQGHTVFLISWRNADA++  ATW++Y++D V++ +H
Sbjct: 215 VPPCINKYYILDLQAHNSFVRYAVEQGHTVFLISWRNADASIAHATWNDYIEDGVLQAMH 274

Query: 307 IVQEISKQPQINALGFCVGGTILSCALALLAARGEDPVASLTLLTTFLDFSDTGAIDVYI 366
           + + I++Q +IN LGFCVGGT+L+ ALAL  ARGE+P ASLTLLTTFLDFSDTG +DVYI
Sbjct: 275 VAKAITRQEKINVLGFCVGGTMLTNALALACARGEEPAASLTLLTTFLDFSDTGILDVYI 334

Query: 367 DEMQLALREQMIGQRGLMAGRDFASAFSSLRPNDLLWNYVESNYLKGEKPSAFDLLYWNA 426
           DE ++   EQ IG  GLM G DF +AF+SLR N+L+WNYV SNYLKGE P+ FD+LYWNA
Sbjct: 335 DEGKIKEIEQEIGSGGLMKGLDFNAAFASLRSNELIWNYVASNYLKGENPAPFDMLYWNA 394

Query: 427 DSTNLPGPMFCYYLRHMYLENALKEPGRLSVGGEKIDLRKISAPAFIYASRDDHIVPWKS 486
           DSTNLPGPM+C+Y+R+ YLEN LK+ G+  +G + IDLR+I AP+FIY SRDDHIVPW S
Sbjct: 395 DSTNLPGPMYCWYVRNTYLENNLKQFGKFMLGDKSIDLRQIDAPSFIYGSRDDHIVPWTS 454

Query: 487 AYASLGLINTGKRSNNRFVLGASGHIAGVINPASKNKRNYWLNDKAKVGSDADTWLAGAT 546
           AY S+ ++N  K   NRFVLGA+GHIAGVINP  K++R YW+ND  + G DA +WLAGA 
Sbjct: 455 AYESVNILNRKKPQQNRFVLGAAGHIAGVINPPGKSRRQYWIND-VQDGLDAMSWLAGAQ 513

Query: 547 EHPGSWWGEWAAFLAKHGGRKVAAPKTAGSTRYKHIEAAPGRYVKVK 593
           E  GSWW  W  FLA H G++V A    G+ ++K IEAAPGRYVK K
Sbjct: 514 EVAGSWWPAWTEFLASHAGKQVKARSKLGNAKFKPIEAAPGRYVKAK 560


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,346,910
Number of extensions: 54120
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 507
Effective length of database: 891,988
Effective search space: 452237916
Effective search space used: 452237916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)